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[bioontology-support] Advice needed for ontology social quality assessment research
jonquet at lirmm.fr
Wed Feb 24 16:50:24 PST 2016
Interesting research for sure.
It would be interesting to know your metrics/criteria (size, metadata, coverage for given corpus, etc.) before assessing anything about the results.
We have been working on recommending/selecting ontologies with Marcos (CC) and it depends a lot on what are the purpose and what are the criteria to serve those purposes.
The browse page offers different ordering (top right)
This are also based on different criterias.
De : bioontology-support [mailto:bioontology-support-bounces at lists.stanford.edu] De la part de Melinda Hardy McDaniel
Envoyé : samedi 13 février 2016 15:11
À : bioontology-support at lists.stanford.edu
Objet : [bioontology-support] Advice needed for ontology social quality assessment research
I am working on research regarding ontology quality evaluation from the viewpoint of its domain community. I am trying to assess the relative value of the ontologies in a community to the community’s members using metrics I have developed. I am testing my metrics using the BioPortal library because of its active community.
The results I obtained look very promising in that the highest ranked ontologies do seem to be the ones that are most used, but I am not sure whether the lowest ranked ontologies using my system are actually less well regarded.
Can you please take a look at the table I have below, which shows a subset of the results? If you are familiar with any of the ontologies listed can you please tell me whether these numbers appear correct? ( I also have rankings by keyword if that would be more easy to understand.)
Any other suggestions you can make or any other questions you may have would be extremely helpful to me.
Thanks very much in advance!
10 Highest Ranked BioPortal ontologies
Human Phenotype Ontology
Mosquito Insecticide Resistance Ontology
Mass Spectrometry Ontology
Systems Biology Ontology
Minimal Anatomical Ontology
Sequence Types and Features Ontology
Human Disease Ontology
Mammalian Phenotype Ontology
Plant Trait Ontology
10 Lowest Ranked BioPortal ontologies
Ontology of Alternative Medicine, French <http://bioportal.bioontology.org/ontologies/ONTOMA>
Ontology of Pneumology <http://bioportal.bioontology.org/ontologies/ONTOPNEUMO>
Medical image simulation <http://bioportal.bioontology.org/ontologies/OntoVIP>
Pharmacovigilance Ontology <http://bioportal.bioontology.org/ontologies/PVONTO>
Randomized Controlled Trials Ontology <http://bioportal.bioontology.org/ontologies/RCTONT>
Research Network and Patient Registry Inventory Ontology <http://bioportal.bioontology.org/ontologies/RNPRIO>
Role Ontology <http://bioportal.bioontology.org/ontologies/ROLEO>
Traditional Medicine Meridian Value Sets <http://bioportal.bioontology.org/ontologies/TM-MER>
Units Ontology <http://bioportal.bioontology.org/ontologies/UNITSONT>
<http://bioportal.bioontology.org/ontologies/VSO> Vital Sign Ontology
Computer Science Department
Georgia State University
Atlanta, GA 30302
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