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[bioontology-support] bioportal API issue

Steve Deharo steve.x.deharo at gsk.com
Wed Mar 23 10:59:39 PDT 2016


Hello,

I have been in touch a few weeks ago about an issue with the API access. Please see the issue in the forwarded email below. The issue was resolved previously but has reoccurred e.g. http://data.bioontology.org/ontologies/MESH/classes has no data, although it can be browsed here http://bioportal.bioontology.org/ontologies/MESH?p=classes&conceptid=root

Would you be able to answer the following questions:

-          Can this be fixed?

-          Is there a long term plan to prevent this issue reoccurring?

Regards,
Steve

From: Steve Deharo
Sent: 25 February 2016 12:03
To: 'support at bioontology.org'
Subject: Internal server error

Hello,

I am trying to download the mapping between MeSH and EFO. The following call returns an error:
http://data.bioontology.org/ontologies/EFO/classes/?apikey=<http://data.bioontology.org/ontologies/EFO/classes/?apikey=d072f18c-fcad-418e-8de2-913613bc8d05>[my_key_here]
This worked last month.

The error is "Internal Server Error".

I have tried the following:
http://data.bioontology.org/ontologies/EFO/notes
http://data.bioontology.org/ontologies/EFO/classes
Both give the same error. However other links from http://data.bioontology.org/ontologies/EFO/ work eg:
http://data.bioontology.org/ontologies/EFO/properties"<http://data.bioontology.org/ontologies/EFO/properties>
http://data.bioontology.org/ontologies/EFO/views

According to http://bioportal.bioontology.org/mappings
2360 MeSH terms are mapped to EFO. The html table is accessible.

Could you please look into this?

Thanks,
Steve


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