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[bioontology-support] Failed to parse PSI-MS CV in BioPortal VA

Jennifer Leigh Vendetti vendetti at
Tue May 17 11:33:55 PDT 2016

Hello Vincent,

On May 16, 2016, at 11:57 PM, vincentguo <gjw_0418 at<mailto:gjw_0418 at>> wrote:

Dear BioPortal experts,

   I submitted PSI-MS Controlled Vocabulary (version: 3.86.2, downloaded
from HUPO official website: into
our BioPortal VA (version2.4) and got an import error.

I downloaded the OBO file from the URL you mention above and was able to parse in BioPortal without any errors.

   Then I replaced the imports with:

   I still got an import error as follows:
Message: Error Could not load imported ontology:
<> Cause: Problem parsing

Based on this error message from the log, I’m theorizing that this may be a more general issue with your virtual appliance not being connected to a network that would allow access to these outside import resources, e.g.,

From your virtual appliance, are you able to ping an outside resource like Google (ping -c 5<>)?

You could also try to see if a curl command returns any data (curl<>).


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