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[bioontology-support] Failed to parse PSI-MS CV in BioPortal VA

Jennifer Leigh Vendetti vendetti at stanford.edu
Wed May 18 16:35:49 PDT 2016


Hello Vincent,

Could you please send us the entire contents of the parsing log?  Seems like you already know where it is, but just in case - here are the instructions for where it’s located:

http://www.bioontology.org/wiki/index.php/Virtual_Appliance_FAQ#Is_there_a_log_file_for_parsing.3F

Thank you,
Jennifer



On May 18, 2016, at 8:46 AM, vincentguo <gjw_0418 at sina.com<mailto:gjw_0418 at sina.com>> wrote:

Hi Jennifer,

 Our virtual appliance is able to get access to both the outside import
resources:
http://purl.obolibrary.org/obo/pato.obo
http://purl.obolibrary.org/obo/uo.obo

 The two addresses lead us to another two addresses, which our VA can also
connect to:
https://raw.githubusercontent.com/pato-ontology/pato/master/pato.obo
http://www.berkeleybop.org/ontologies/uo.obo

 But we get the error described last time.

/With best regards,
Vincent/



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