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[bioontology-support] [BioPortal] Load from URL failure for Plant Ontology

Jennifer Leigh Vendetti vendetti at
Mon Oct 17 16:09:06 PDT 2016

Hi Laurel,

Sorry - I’m not sure what you mean when you say the ontology isn’t working.  I went to the metadata and classes pages for the September 2016 version you mentioned and all the data looks like it’s displaying fine (screen shots below).

Ontologies that have download URLs specified are pulled on a nightly basis.  If you edited the download URL today, BioPortal would check for a new version of your ontology overnight tonight and you should be able to see it tomorrow.  If you need it immediately, let us know and I can manually process it now for you.


[cid:BC21B8AF-0BC9-49C4-8D1A-B15DF3D45996 at]

[cid:5DC973A2-B869-4E97-8AEB-D050A25E5064 at]

On Oct 17, 2016, at 3:40 PM, Laurel Cooper <cooperl at<mailto:cooperl at>> wrote:

Thanks for your help with the PO, I am also having issues with this one:

I had uploaded new version back in September and still not working- updated the submission info today to point at

Thanks for your help


On 10/17/16 12:07 PM, Jennifer Leigh Vendetti wrote:
Hi Laurel,

Apologies for the delay.  The latest version of the Plant Ontology is now parsed and available in BioPortal:


On Oct 14, 2016, at 11:33 AM, Laurel Cooper <cooperl at<mailto:cooperl at>> wrote:


I fixed the link for the Plant Ontology by replacing the url below with the PURL:

But the download links are still pointing at the previous version.

Thanks, Laurel Cooper

-------- Forwarded Message --------
Subject:        [BioPortal] Load from URL failure for Plant Ontology
Date:   Thu, 13 Oct 2016 18:09:05 -0700
From:   admin at<mailto:admin at>
To:     cooperl at<mailto:cooperl at>

BioPortal failed to load Plant Ontology (PO) from URL:

Please verify the URL you provided for daily loading of your ontology:

  1.  Make sure you are signed in to BioPortal.
  2.  Navigate to your ontology summary page:
  3.  Click the "Edit submission information" link.
  4.  In the Location row, verify that you entered a valid URL for daily loading of your ontology in the URL text area.

If you need further assistance, please contact us<mailto:support at> via the BioPortal support mailing list.

Thank you,
The BioPortal Team
bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

Laurel (Lol) Cooper, PhD
Bioinformatics Scientist, The Planteome Project
Dept. of Botany and Plant Pathology
Rm 3086, Cordley Hall
Oregon State University
Corvallis, OR 97331

Phone: 541-737-5272
Fax: 541-737-3573
Skype: cooperlol910

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