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[bioontology-support] [BioPortal] Feedback from muhammad amith

John Graybeal jgraybeal at
Wed Oct 19 13:52:06 PDT 2016

Hello Muhammad,

There is no trivial way to get a data dump of all the ontologies. BioPortal's API access let's you access the ontologies in their original format, which may not always be RDF or OWL.

Of course some ontologies are private, so you would not have access to them.

As I recall, there is software written that may go a long way toward what you want -- it was mentioned on the list about a year ago. I don't have time to look for the post now, but maybe someone can save me and come up with a reference.


On Oct 19, 2016, at 2:03 AM, support at<mailto:support at> wrote:

Name: muhammad amith

Email: muhammad.f.amith at<mailto:muhammad.f.amith at>



To whom it may concern, I am writing to ask if there is a way to get a data dump of all of the ontologies in either rdf or owl format?

bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
skype: graybealski

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