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[bioontology-support] [BioPortal] Feedback from safrant

Safran, Tracy (NIH/NCI) [C] safrant at mail.nih.gov
Wed Sep 14 11:52:03 PDT 2016


OK.  I’ll double check my scripts.  I was doing a wget on the address copied from the page and had come up with an OBO file in the EP “slot”.

Tracy M. Safran
Programmer Analyst - EVS support
Frederick National Laboratory for Cancer Research
Leidos Biomedical Research, Inc.
Ph: 240-276-5172
Tracy.Safran at fnlcr.nih.gov<mailto:Tracy.Safran at fnlcr.nih.gov>


From: Jennifer Leigh Vendetti <vendetti at stanford.edu>
Date: Wednesday, September 14, 2016 at 2:36 PM
To: "Safran , Tracy (NIH/NCI) [C]" <safrant at mail.nih.gov>
Cc: "support at bioontology.org" <support at bioontology.org>
Subject: Re: [bioontology-support] [BioPortal] Feedback from safrant

Hi Tracy,


On Sep 14, 2016, at 6:27 AM, Safran, Tracy (NIH/NCI) [C] <safrant at mail.nih.gov<mailto:safrant at mail.nih.gov>> wrote:

Thanks.  I found another one mislabeled in a similar manner http://bioportal.bioontology.org/ontologies/EP .  I fear there was some systemic error in labeling these links.


I’m not sure what you mean here by mislabeled.  The EP ontology download format is OWL, which is correct because this is an OWL ontology.  If you click the download link, it results in a download of the ontology source file “CVRG_EPOntology.owl”.  I looked at the ontology source and confirmed that it’s an OWL file.

Could you clarify what you thought was incorrect here?

Thanks,
Jennifer





Tracy M. Safran
Programmer Analyst - EVS support
Frederick National Laboratory for Cancer Research
Leidos Biomedical Research, Inc.
Ph: 240-276-5172
Tracy.Safran at fnlcr.nih.gov<mailto:Tracy.Safran at fnlcr.nih.gov>


From: Jennifer Leigh Vendetti <vendetti at stanford.edu<mailto:vendetti at stanford.edu>>
Date: Tuesday, September 13, 2016 at 9:17 PM
To: "support at bioontology.org<mailto:support at bioontology.org>" <support at bioontology.org<mailto:support at bioontology.org>>
Cc: "Safran , Tracy (NIH/NCI) [C]" <safrant at mail.nih.gov<mailto:safrant at mail.nih.gov>>
Subject: Re: [bioontology-support] [BioPortal] Feedback from safrant

Hi,

We’ve updated the ontology format to OBO and the label displays correctly now.

Jennifer


On Sep 13, 2016, at 11:54 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:

Name: safrant
Email: safrant at mail.nih.gov<mailto:safrant at mail.nih.gov>
Location: http://bioportal.bioontology.org/ontologies/RETO

Feedback:
On the page http://bioportal.bioontology.org/ontologies/RETO, the 2015 submission dated 12/16/2015 has four download formats listed. The first one is listed at "OWL" but actually downloads an OBO file. Please correct the link label.
Thanks,

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