Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Running ncbo_ontology_process

Vincent Emonet vincent.emonet at
Tue Sep 20 07:37:18 PDT 2016


I am trying to run the ncbo_ontology_process script to re-process some 
ontologies. I already used it in the past and it was working properly.

But when in try to run it (as root) I get the following error:

> Failed, exception: LinkedData::Security::WriteAccessDeniedError: Write 
> access denied
> /usr/local/rbenv/versions/2.1.5/lib/ruby/gems/2.1.0/bundler/gems/ontologies_linked_data-84c8b6581581/lib/ontologies_linked_data/models/base.rb:182:in 
> `write_permission_check'
> /usr/local/rbenv/versions/2.1.5/lib/ruby/gems/2.1.0/bundler/gems/ontologies_linked_data-84c8b6581581/lib/ontologies_linked_data/models/base.rb:12:in 
> `save'
> /usr/local/rbenv/versions/2.1.5/lib/ruby/gems/2.1.0/bundler/gems/ontologies_linked_data-84c8b6581581/lib/ontologies_linked_data/models/ontology_submission.rb:1343:in 
> `process_submission'
> /srv/ncbo/ncbo_cron/lib/ncbo_cron/ontology_submission_parser.rb:194:in 
> `process_submission'

It can't save the submission because of a "Write access denied". But I 
am running it from the command line as root user. Have you already faced 
this problem? Do you know where it could come from?



More information about the bioontology-support mailing list