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[bioontology-support] [BioPortal] Feedback from Aref Eshghi

Aref Eshghi arefe at student.unimelb.edu.au
Mon Apr 3 19:12:47 PDT 2017


Dear Jennifer,

Thank you for your swift reply.

Maybe that is the reason that I had problems querying the ontology, because
I tried to do that (using the namespace with the name of ontology at the
end of it) but did not work for NIFSTD which I am interested to query. I
will look into the REST API then.

Kind Regards,
Aref

On Tue, Apr 4, 2017 at 5:17 AM, Jennifer Leigh Vendetti <
vendetti at stanford.edu> wrote:

> Hello Aref,
>
> On Apr 3, 2017, at 1:28 AM, support at bioontology.org wrote:
>
> Name: Aref Eshghi
>
> Email: arefe at student.unimelb.edu.au
>
> Location: http://sparql.bioontology.org/
>
>
> *Feedback:*
>
> Dear Sir/ Madam,
>
> I wanted to know where I can find URIs for ontologies (e.g. NIFSTD) on
> bioportal for using them within the BioPortal endpoint?
>
>
>
> Ontologies are referenced by their acronym, e.g.:
>
> http://bioportal.bioontology.org/ontologies/NIFSTD
>
> In other words, the base URL is always the same, followed by the ontology
> acronym as the last fragment.  Ontology acronyms are always listed in the
> Details pane on the ontology summary pages.
>
> Incidentally, the BioPortal SPARQL endpoint is a beta service with
> outdated data.  For the most current ontology data, I suggest using our
> REST API (documented here: http://data.bioontology.org/documentation).
>
> Kind regards,
> Jennifer
>
>
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