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[bioontology-support] [BioPortal] Feedback from marcibowen

Jennifer Leigh Vendetti vendetti at stanford.edu
Wed Aug 16 12:26:56 PDT 2017


Hi Marci,

Our REST API with examples of URLs for retrieving particular types of data is available here:

http://data.bioontology.org/documentation

Here’s a specific example of retrieving the class data for a class in the SNOMED ontology:

http://data.bioontology.org/ontologies/SNOMEDCT/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FSNOMEDCT%2F123037004<http://data.bioontology.org/ontologies/SNOMEDCT/classes/http://purl.bioontology.org/ontology/SNOMEDCT/123037004>

Notice that the class ID has to be URL encoded.

I don’t know which property you’re referring to when you say “code”. You may want to use the “include=all” parameter when making the above call to see which part of the result is of interest to you, e.g.:

http://data.bioontology.org/ontologies/SNOMEDCT/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FSNOMEDCT%2F123037004?include=all<http://data.bioontology.org/ontologies/SNOMEDCT/classes/http://purl.bioontology.org/ontology/SNOMEDCT/123037004?include=all>

If you want to make these calls via curl, simply prepend the URL with “curl”, e.g.:

curl https://data.bioontology.org/ontologies/SNOMEDCT/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FSNOMEDCT%2F123037004<https://data.bioontology.org/ontologies/SNOMEDCT/classes/http://purl.bioontology.org/ontology/SNOMEDCT/123037004>

You need an API key to use our REST API. Instructions for getting an API key are here:

https://www.bioontology.org/wiki/index.php/BioPortal_Help#Getting_an_API_key

Kind regards,
Jennifer


On Aug 16, 2017, at 11:37 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:


Name: marcibowen

Email: marcia.bowen at duke.edu<mailto:marcia.bowen at duke.edu>

Location: https%3A%2F%2Fbioportal.bioontology.org<http://2Fbioportal.bioontology.org>%2F500%3Fp%3Dclasses%26conceptid%3Dhttp%253A%252F%252Fpurl.bioontology.org<http://252Fpurl.bioontology.org>%252Fontology%252FSNOMEDCT%252F91175000

Feedback:

Would you please send me the link to the documentation for a query using CURL?

I need to be able to search for a term in SNOMED CT, download a report of those codes, but I do not know how to do it.

Thanks,
Marci Bowen

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