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[bioontology-support] [BioPortal] Feedback from nlorimer

Nancy Lorimer nlorimer at stanford.edu
Tue Aug 29 16:15:45 PDT 2017


Thanks. Two final things.

1. I removed it from being "Private" to be "Public". I take it that 
could take some time to take effect? I can't see it in CEDAR yet.

2. Could you move this into the BiblioPortal slice for me?

thanks again for all your patient help.

Nancy


On 8/29/2017 11:20 AM, Jennifer Leigh Vendetti wrote:
> Yes - on the Active Ontology tab in Protege you can see the list of 
> imports that your ontology uses. You can also add and remove the 
> imports from this tab. Once doing so, you’d need to upload your new 
> version to GitHub so that BioPortal can access as part of the nightly 
> pull.
>
> Kind regards,
> Jennifer
>
>
>
>
>
>
>> On Aug 29, 2017, at 10:55 AM, Nancy Lorimer <nlorimer at stanford.edu 
>> <mailto:nlorimer at stanford.edu>> wrote:
>>
>> Thanks very much! So to get rid of the Bibframe, I would need to 
>> remove that connection in Protege...
>>
>> Nancy
>>
>> On 8/29/2017 10:42 AM, Jennifer Leigh Vendetti wrote:
>>> Hi Nancy,
>>>
>>>
>>>> On Aug 28, 2017, at 9:40 PM, Nancy Lorimer <nlorimer at stanford.edu 
>>>> <mailto:nlorimer at stanford.edu>> wrote:
>>>>
>>>> Huh, it just took a really long time, and I seem to have pulled in 
>>>> the BF base as well, which I didn't quite want. Comes from using 
>>>> the Protege file, I guess.
>>>
>>>
>>> BIBFRAME is pulled in due to the import statement on line 22 of your 
>>> ontology source file. Here’s a link to the exact line in the version 
>>> in GitHub:
>>>
>>> https://github.com/LD4P/PerformedMusicOntology/blob/master/PerformedMusicOntology.owl#L22
>>>
>>>
>>>
>>>>
>>>> On Github, it is at 
>>>> https://github.com/LD4P/PerformedMusicOntology/blob/master/PerformedMusicOntology.owl. 
>>>> Would I use that URL?
>>>
>>>
>>> There is one additional step you need to take to get the correct 
>>> URL. On the page that you reference above, click the “Raw” button to 
>>> navigate to the raw ontology source file. The resulting URL in the 
>>> browser window is the one you use, i.e.:
>>>
>>> https://raw.githubusercontent.com/LD4P/PerformedMusicOntology/master/PerformedMusicOntology.owl
>>>
>>> Notice that the URL begins with “raw.githubusercontent.com 
>>> <http://raw.githubusercontent.com/>”.
>>>
>>> I created a new submission on your behalf and entered this URL as 
>>> the pull location. The new submission is fully parsed and available 
>>> to view in BioPortal. Your pull URL will be checked nightly for new 
>>> versions.
>>>
>>> Kind regards,
>>> Jennifer
>>>
>>>
>>
>>
>> -- 
>> Nancy Lorimer
>> Head, Metadata Dept
>> Stanford University Libraries
>> nlorimer at stanford.edu
>> 650-725-8819
>


-- 
Nancy Lorimer
Head, Metadata Dept
Stanford University Libraries
nlorimer at stanford.edu
650-725-8819

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