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[bioontology-support] Mapping download

John Graybeal jgraybeal at stanford.edu
Fri Feb 3 20:29:38 PST 2017


Hi Stephanie,

You can't get a table exactly, but the call documentated at http://data.bioontology.org/documentation#Mapping should do what you want, returning JSON:
 http://data.bioontology.org/mappings?ontologies=MEDDRA,EFO

This returns each mapped pair as an array of JSON objects. [1]

John

[1] The @id: values contain the two class IDs that are mapped.

classes": [

  *
-
{
     *   "@id": "http://www.ebi.ac.uk/efo/EFO_0000197"<http://www.ebi.ac.uk/efo/EFO_0000197>,
     *   "@type": "http://www.w3.org/2002/07/owl#Class"<http://www.w3.org/2002/07/owl#Class>,
     *
+
"links": { … },
     *
-
"@context": {
        *   "@vocab": "http://data.bioontology.org/metadata/"<http://data.bioontology.org/metadata/>
}
},
  *
-
{
     *   "@id": "http://purl.bioontology.org/ontology/MEDDRA/10061564"<http://purl.bioontology.org/ontology/MEDDRA/10061564>,
     *   "@type": "http://www.w3.org/2002/07/owl#Class"<http://www.w3.org/2002/07/owl#Class>,
     *
+
"links": { … },
     *
-
"@context": {
        *   "@vocab": "http://data.bioontology.org/metadata/"<http://data.bioontology.org/metadata/>
}
}

],


On Feb 2, 2017, at 10:57 AM, Prinz, Stephanie J., Ph.D. <Prinz.Stephanie at mayo.edu<mailto:Prinz.Stephanie at mayo.edu>> wrote:

Hello,


The NCBO Bioportal is a great tool to browse ontologies and their mappings. I would like to download a table (csv or whatever format) of a mapping (from MedDRA to EFO), is that possible?

Thank you and best regards,

Stephanie
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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632
skype: graybealski


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