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[bioontology-support] Issue using NCBO Extraction Tool

ABEGG Sébastien Sebastien.Abegg at hcuge.ch
Mon Feb 27 00:56:44 PST 2017


Hello,

I'm trying to use the NCBO Extraction Tool, but I am facing the following issue:

Erreur : impossible de trouver ou charger la classe principale edu.harvard.i2b2.ncbo.extraction.NCBOOntologyExtractAll

This appears when launching the following command:



java -classpath endorsed_lib/*:genlib/i2b2Common-core.jar:lib/commons/*:lib/log4j/*:lib/jdbc/*:lib/spring/*:* edu.harvard.i2b2.ncbo.extraction.NCBOOntologyExtractAll -ont ICD9CM -apikey YOUR_API_KEY -outputFileName /YOUR_DIR/ICD9CM_stagingFile.txt &



ONTOLOGY, API_KEY and ONT have been replaced.



Thanks in advance for your help.



Kind regards,



Sebastien

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