Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] Issue using NCBO Extraction Tool

ABEGG Sébastien Sebastien.Abegg at
Mon Feb 27 00:56:44 PST 2017


I'm trying to use the NCBO Extraction Tool, but I am facing the following issue:

Erreur : impossible de trouver ou charger la classe principale edu.harvard.i2b2.ncbo.extraction.NCBOOntologyExtractAll

This appears when launching the following command:

java -classpath endorsed_lib/*:genlib/i2b2Common-core.jar:lib/commons/*:lib/log4j/*:lib/jdbc/*:lib/spring/*:* edu.harvard.i2b2.ncbo.extraction.NCBOOntologyExtractAll -ont ICD9CM -apikey YOUR_API_KEY -outputFileName /YOUR_DIR/ICD9CM_stagingFile.txt &

ONTOLOGY, API_KEY and ONT have been replaced.

Thanks in advance for your help.

Kind regards,


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <>

More information about the bioontology-support mailing list