Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] BTO ontology not working

John Graybeal jgraybeal at stanford.edu
Fri Mar 10 08:14:02 PST 2017


Nick, there appears to be some problem accessing classes from this ontology (e..g, http://bioportal.bioontology.org/ontologies/GO/?p=classes&conceptid=root from the browser produces a "Problem retrieving classes" error).

Thanks for your report.  We will have a look at this and let you know our progress.

John

On Mar 10, 2017, at 6:22 AM, Felicelli, Nicholas (Nick) <Nicholas.Felicelli at cchmc.org<mailto:Nicholas.Felicelli at cchmc.org>> wrote:

Jennifer,
  I was trying to get to the urls but now I am getting an error: http://bioportal.bioontology.org/ontologies/BTO is the url I was using but its not working.

-Nick

From: Jennifer Leigh Vendetti <vendetti at stanford.edu<mailto:vendetti at stanford.edu>>
Date: Thursday, March 9, 2017 at 4:29 PM
To: "support at bioontology.org<mailto:support at bioontology.org>" <support at bioontology.org<mailto:support at bioontology.org>>
Cc: Nicholas Felicelli <Nicholas.Felicelli at cchmc.org<mailto:Nicholas.Felicelli at cchmc.org>>
Subject: Re: [bioontology-support] [BioPortal] Feedback from fellw9

Hello Nicholas,

On Mar 9, 2017, at 8:23 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:

Name: fellw9
Email: nicholas.felicelli at cchmc.org<mailto:nicholas.felicelli at cchmc.org>
Location: http%3A%2F%2Fbioportal.bioontology.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__2Fbioportal.bioontology.org&d=DwMGaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=pWDnieq-OzyjZChNAbXt8FBGr2Wn-Y79NGiLV0nxfrM&m=17-jrE2ALey4B3aI8WPCz6Ib1RLinmunmKIE4G4aIrE&s=RjPHHYqEi4NV2vBeM-ZrcHsQ0l1csmrQ6kYL3hFQ1Po&e=>%2Flost_pass

Feedback:
Links in the BTO ontology don't seem to be working.
I goto this url: http://bioportal.bioontology.org/ontologies/BTO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBTO_0000089&jump_to_nav=true<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioportal.bioontology.org_ontologies_BTO_-3Fp-3Dclasses-26conceptid-3Dhttp-253A-252F-252Fpurl.obolibrary.org-252Fobo-252FBTO-5F0000089-26jump-5Fto-5Fnav-3Dtrue&d=DwMGaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=pWDnieq-OzyjZChNAbXt8FBGr2Wn-Y79NGiLV0nxfrM&m=17-jrE2ALey4B3aI8WPCz6Ib1RLinmunmKIE4G4aIrE&s=gua0-hRNpzSfqwSrgTQGDqL1P7PsPHebjmIHl86SWGM&e=>
I look at the ID field and use that url but the term is not found. I believe that it used to work.



Sorry - I’m unclear on what you’re referring to here.  Do you mean that you’re trying to use the class ID from above in a REST call and you’re not getting results?  I’m unable to reproduce that at the moment, i.e.:

<image001.png>

Or, do you mean that you’re trying to do something in the UI and you’re not getting the results you expect?

Kind regards,
Jennifer

_______________________________________________
bioontology-support mailing list
bioontology-support at lists.stanford.edu<mailto:bioontology-support at lists.stanford.edu>
https://mailman.stanford.edu/mailman/listinfo/bioontology-support

========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632
skype: graybealski


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20170310/5b2bedf7/attachment-0001.html>


More information about the bioontology-support mailing list