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[bioontology-support] [BioPortal] Feedback from fellw9

Jennifer Leigh Vendetti vendetti at stanford.edu
Wed Mar 15 11:11:46 PDT 2017


Hello Nick,

We had a BioPortal outage this morning.  The system is back up now.  Apologies for the inconvenience.

Jennifer


On Mar 15, 2017, at 7:10 AM, Felicelli, Nicholas (Nick) <Nicholas.Felicelli at cchmc.org<mailto:Nicholas.Felicelli at cchmc.org>> wrote:

I am still having problems with both the web and the API now.  You may already know but in case you don’t I wanted to let you know nothing is working for me (login, API with key requests).

Thanks,
-Nick

From: Jennifer Leigh Vendetti <vendetti at stanford.edu<mailto:vendetti at stanford.edu>>
Date: Friday, March 10, 2017 at 3:01 PM
To: Nicholas Felicelli <Nicholas.Felicelli at cchmc.org<mailto:Nicholas.Felicelli at cchmc.org>>
Cc: "support at bioontology.org<mailto:support at bioontology.org>" <support at bioontology.org<mailto:support at bioontology.org>>
Subject: Re: [bioontology-support] [BioPortal] Feedback from fellw9

Hello Nick,

Apologies for the inconvenience.  The BTO ontology is accessible again.  I also checked the URL you originally sent, and it looks like the “blood” class is displaying properly.  Please let me know if you see other issues here.

Jennifer



On Mar 10, 2017, at 6:22 AM, Felicelli, Nicholas (Nick) <Nicholas.Felicelli at cchmc.org<mailto:Nicholas.Felicelli at cchmc.org>> wrote:

Jennifer,
  I was trying to get to the urls but now I am getting an error: http://bioportal.bioontology.org/ontologies/BTO<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioportal.bioontology.org_ontologies_BTO&d=DwMGaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=pWDnieq-OzyjZChNAbXt8FBGr2Wn-Y79NGiLV0nxfrM&m=X-j4x3YYhTCVDdWmlJT96TYh7MX8RT2E_EKDmC6Hgoc&s=4BUU3Lx1pOEMs6xkAjjE07Utznqk9aomvYy3_CRDb98&e=> is the url I was using but its not working.

-Nick

From: Jennifer Leigh Vendetti <vendetti at stanford.edu<mailto:vendetti at stanford.edu>>
Date: Thursday, March 9, 2017 at 4:29 PM
To: "support at bioontology.org<mailto:support at bioontology.org>" <support at bioontology.org<mailto:support at bioontology.org>>
Cc: Nicholas Felicelli <Nicholas.Felicelli at cchmc.org<mailto:Nicholas.Felicelli at cchmc.org>>
Subject: Re: [bioontology-support] [BioPortal] Feedback from fellw9

Hello Nicholas,

On Mar 9, 2017, at 8:23 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:

Name: fellw9
Email: nicholas.felicelli at cchmc.org<mailto:nicholas.felicelli at cchmc.org>
Location: http%3A%2F%2Fbioportal.bioontology.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__2Fbioportal.bioontology.org&d=DwMGaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=pWDnieq-OzyjZChNAbXt8FBGr2Wn-Y79NGiLV0nxfrM&m=17-jrE2ALey4B3aI8WPCz6Ib1RLinmunmKIE4G4aIrE&s=RjPHHYqEi4NV2vBeM-ZrcHsQ0l1csmrQ6kYL3hFQ1Po&e=>%2Flost_pass

Feedback:
Links in the BTO ontology don't seem to be working.
I goto this url: http://bioportal.bioontology.org/ontologies/BTO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FBTO_0000089&jump_to_nav=true<https://urldefense.proofpoint.com/v2/url?u=http-3A__bioportal.bioontology.org_ontologies_BTO_-3Fp-3Dclasses-26conceptid-3Dhttp-253A-252F-252Fpurl.obolibrary.org-252Fobo-252FBTO-5F0000089-26jump-5Fto-5Fnav-3Dtrue&d=DwMGaQ&c=P0c35rBvlN7D8BNx7kSJTg&r=pWDnieq-OzyjZChNAbXt8FBGr2Wn-Y79NGiLV0nxfrM&m=17-jrE2ALey4B3aI8WPCz6Ib1RLinmunmKIE4G4aIrE&s=gua0-hRNpzSfqwSrgTQGDqL1P7PsPHebjmIHl86SWGM&e=>
I look at the ID field and use that url but the term is not found. I believe that it used to work.



Sorry - I’m unclear on what you’re referring to here.  Do you mean that you’re trying to use the class ID from above in a REST call and you’re not getting results?  I’m unable to reproduce that at the moment, i.e.:

<image001.png>

Or, do you mean that you’re trying to do something in the UI and you’re not getting the results you expect?

Kind regards,
Jennifer



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