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[bioontology-support] New ontology submission - file upload error
Jennifer Leigh Vendetti
vendetti at stanford.edu
Mon May 8 16:34:51 PDT 2017
I found two issues that prevented your ontology from parsing in BioPortal:
1). The pull URL was specified incorrectly (pointing to an HTML page on GitHub rather than the ontology source file).
2). Seven occurrences of invalid values in xml:lang attributes.
I downloaded your ontology file from GitHub and corrected the xml:lang attributes in my local copy. I created a new submission for your ontology (with all the same metadata, except that I specified a file upload instead of a pull URL). The corrected ontology file parsed successfully and is now fully available for you to browse in BioPortal .
I noticed that you specified a viewing restriction of “private”, so I’ll contact you off the support list with more specific information with regard to fixing your ontology.
On May 5, 2017, at 3:46 AM, Jade Hotchkiss <giant.plankton at gmail.com<mailto:giant.plankton at gmail.com>> wrote:
I successfully submitted the SCDO ontology into BioPortal (restricted to private). It is now available here: http://bioportal.bioontology.org/ontologies/SCDO, but it shows that there was an upload error with the file submitted. And when I click on the "Classes" tab I get this message: "Problem retrieving classes".
Is this because of the delay in the ontology being visible on the site or is there really something wrong with the file I provided?
I tried two different ways of providing access to the file, but I get the same result:
1) file path in github
2) uploaded file from my PC
Thank you in advance for your help.
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