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[bioontology-support] Submission of SCIO ontology

Matthias Hartung mhartung at cit-ec.uni-bielefeld.de
Fri Nov 24 08:48:50 PST 2017


Dear support team,

as a follow-up to our submission of the Spinal Cord Injury Ontology
(SCIO) to BioPortal, we would like to ask whether there is a possibility
to visualize the instances contained in the ontology as well (besides
classes and properties)?

Best regards,

Matthias Hartung




On 20.09.2017 16:58, Jennifer Leigh Vendetti wrote:
> Hello Matthias,
> 
> The “Load from URL” property of your ontology submission was set to a
> directory instead of a complete path that includes the name of the
> ontology file that you want BioPortal to check nightly. I created a new
> submission of your ontology and changed the previous value
> from http://psink.de/scio to http://psink.de/scio/SCIO_51.owl. Your
> ontology is now fully parsed and available in BioPortal.
> 
> If you’re interested in publishing new versions to that location, a
> suggested best practice is to use a file name without a version number,
> e.g.:
> 
> http://psink.de/scio/SCIO.owl
> 
> … and instead indicate the version in your ontology source file via the
> owl:versionInfo property. The BioPortal software looks for this property
> at parse time and will display the value in the submission column of the
> Submissions table on the ontology summary page. This advice is optional
> though.
> 
> Kind regards,
> Jennifer
> 
> 
>> On Sep 20, 2017, at 2:13 AM, Matthias Hartung
>> <mhartung at cit-ec.uni-bielefeld.de
>> <mailto:mhartung at cit-ec.uni-bielefeld.de>> wrote:
>>
>> Dear Sir or Madam,
>>
>> we were trying to register the SCIO ontology [1] with BioPortal. The
>> submission has (apparently successfully) taken place yesterday.
>>
>> However, by now the ontology is not accessible via [2]. Instead, an
>> error is reported: "We're sorry but something has gone wrong. We have
>> been notified of this error."
>>
>> We would appreciate any support about what we can do in order to fix
>> this error. Thank you very much for your efforts.
>>
>> Best regards,
>>
>> Matthias Hartung
>>
>>
>> [1] http://psink.de/scio
>> [2] http://purl.bioontology.org/ontology/SCIO
>>
>>
>>
>>
>> -- 
>> Dr. Matthias Hartung
>> Semantic Computing Group
>> Cognitive Interaction Technology Center of Excellence (CITEC)
>> Bielefeld University
>>
>> e-Mail: mhartung at cit-ec.uni-bielefeld.de
>> <mailto:mhartung at cit-ec.uni-bielefeld.de>
>> Phone:  +49 521 106 12223
>> Fax:    +49 521 106 6560
>>
>> Office: 2.310
>>
>> Inspiration 1 / Zehlendorfer Damm 201
>> 33619 Bielefeld
>> Germany
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> <mailto:bioontology-support at lists.stanford.edu>
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
> 

-- 
Dr. Matthias Hartung
Semantic Computing Group
Cognitive Interaction Technology Center of Excellence (CITEC)
Bielefeld University

e-Mail: mhartung at cit-ec.uni-bielefeld.de
Phone:  +49 521 106 12223
Fax:    +49 521 106 6560

Office: 2.310

Inspiration 1 / Zehlendorfer Damm 201
33619 Bielefeld
Germany


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