Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] while trying to make an update: "We're sorry but something has gone wrong. We have been notified of this error."

Anders Riutta anders.riutta at gladstone.ucsf.edu
Tue Oct 17 13:17:42 PDT 2017


Thanks for digging into this, Egon.

Isn't there a feature for automatic, recurrent synchronization of the
ontologies? I think at one point I set up the WIKIPATHWAYS ontology to use
this, but I had to pass it through a format converter proxy. Could that be
causing any problems?

On Tue, Oct 17, 2017 at 7:02 AM, Jennifer Leigh Vendetti <
vendetti at stanford.edu> wrote:

> Hello Egon,
>
> Apologies that you’re having difficulties updating WIKIPATHWAYS. BioPortal
> did experience some brief downtime yesterday, but not today that I’m aware
> of. Are you able to send me the ontology file that you’re attempting to
> submit (vendetti at stanford.edu)? Or, alternatively, if you’re entering
> a URL in the “Load from URL” field of the submission form, please send the
> URL. I’ll try to reproduce the error here so that I can troubleshoot.
>
> Kind regards,
> Jennifer
>
>
> > On Oct 17, 2017, at 4:29 AM, Egon Willighagen <
> egon.willighagen at gmail.com> wrote:
> >
> > Dear support desk,
> >
> > while trying to update an ontology I got a "We're sorry but something
> > has gone wrong. We have been notified of this error." message. I tried
> > this yesterday and again today.
> >
> > Can you assist me? Is the service unavailable at this moment, or is
> > there something wrong with the information I am trying to upload? I'm
> > trying to update the WIKIPATHWAYS ontology, and the input is a Turtle
> > file, containing an OWL ontology. Is that supposed to work, or do I
> > need to convert it to a RDF/XML serialization, perhaps?
> >
> > Your support would be most welcome,
> >
> > with kind regards,
> >
> > Egon
> >
> > --
> > E.L. Willighagen
> > Department of Bioinformatics - BiGCaT
> > Maastricht University (http://www.bigcat.unimaas.nl/)
> > Homepage: http://egonw.github.com/
> > LinkedIn: http://se.linkedin.com/in/egonw
> > Blog: http://chem-bla-ics.blogspot.com/
> > PubList: http://www.citeulike.org/user/egonw/tag/papers
> > ORCID: 0000-0001-7542-0286
> > ImpactStory: https://impactstory.org/u/egonwillighagen
> > _______________________________________________
> > bioontology-support mailing list
> > bioontology-support at lists.stanford.edu
> > https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20171017/bbed8481/attachment.html>


More information about the bioontology-support mailing list