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[bioontology-support] Download SNOMED CT

Jackie Jia Zhou dr.jzhou at gmail.com
Mon Aug 6 08:12:01 PDT 2018


Thank you, Jennifer!

-Jackie

On Thu, Aug 2, 2018 at 12:49 PM, Jennifer Leigh Vendetti <
vendetti at stanford.edu> wrote:

> Hello Jackie,
>
>
> On Aug 1, 2018, at 2:07 PM, Jackie Jia Zhou <dr.jzhou at gmail.com> wrote:
>
> I have a question regarding SNOMED CT on BioPortal. I wonder how I can
> download the newest version SNOMED CT data from BioPortal, as I don't see a
> 'Download' button any where on the SNOMED CT page?
>
>
>
> Due to licensing restrictions, we’re unable to offer downloads of the
> SNOMEDCT ontology source file from our public website. If you’re a current
> UMLS license holder [1], please contact our technical program manager John
> Graybeal (cc'ed) offline for possible download options.
>
> Alternatively, you can access SNOMEDCT data via our REST API, which
> doesn’t require a license. The API is documented here:
>
> http://data.bioontology.org/documentation
>
> If you decide to use the API, you’ll need to get an API key:
>
> https://www.bioontology.org/wiki/BioPortal_Help#Getting_an_API_key
>
>
>
> I am specifically interested in the SNOMED CT disease terms, how can I get
> all those terms?
>
>
>
> Here’s an example of a REST call that would retrieve the “Disease" class
> from SNOMEDCT:
>
> http://data.bioontology.org/ontologies/SNOMEDCT/classes/
> http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FSNOMEDCT%2F64572001
> <http://data.bioontology.org/ontologies/SNOMEDCT/classes/http://purl.bioontology.org/ontology/SNOMEDCT/64572001>
> ?apikey=your_api_key_here
>
> You can use the hypermedia links in the reply to explore things like
> parents, children, descendants, etc.
>
> Kind regards,
> Jennifer
>
> [1] https://www.nlm.nih.gov/databases/umls.html#license_request
>
>
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