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[bioontology-support] [BioPortal] Feedback from cloudcray

Jennifer Leigh Vendetti vendetti at stanford.edu
Fri Aug 17 12:15:01 PDT 2018


Hello,

When you make requests via the API, we only return a subset of available attributes for performance reasons. You can override this behavior using the “include" parameter, documented in the General Usage section of the REST API documentation:

http://data.bioontology.org/documentation#nav_usage

For example, I modified the REST API call you listed below to use “include=all” (return all attributes):

http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2FC0086511?include=all<http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http://purl.bioontology.org/ontology/MEDLINEPLUS/C0086511?include=all>

… and the properties you mentioned are returned (in the properties array):

[cid:B63DAB60-0CC9-486E-A53A-777AF10D9755 at stanford.edu]



Jennifer



On Aug 17, 2018, at 11:34 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:


Name: cloudcray

Email: cloud at patientprice.com<mailto:cloud at patientprice.com>

Location: http%3A%2F%2Fbioportal.bioontology.org<http://2Fbioportal.bioontology.org>%2Fontologies%2FMEDLINEPLUS%3Fp%3Dclasses%26conceptid%3Dhttp%253A%252F%252Fpurl.bioontology.org<http://252Fpurl.bioontology.org>%252Fontology%252FMEDLINEPLUS%252FC1148523%26jump_to_nav%3Dtrue

Feedback:

While using the MedlinePlus Topic ontology, I noticed a discrepancy between the data available in the UI vs the API

Certain properties aren't available on the API, but are visible in the UI, such as "MP HEALTH TOPIC URL" and "MP OTHER LANGUAGE URL". It is important to have access to these properties to properly cite the original source of the information.

Please let me know if there's another way to access this data via API - thank you!

UI URL:

http://bioportal.bioontology.org/ontologies/MEDLINEPLUS/?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2FC1148523&jump_to_nav=true#details

API Request URL:

http://data.bioontology.org/ontologies/MEDLINEPLUS/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FMEDLINEPLUS%2FC0086511

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