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[bioontology-support] [BioPortal] Feedback from chen.yang at ugent.be

Michael Dorf mdorf at stanford.edu
Mon Aug 20 15:45:21 PDT 2018


Hi Chen,

Thanks for contacting us. I’ve looked at your ontology, and it did fail to process in BioPortal. It seems that the underlying issue is:

Caused by: org.semanticweb.owlapi.rdf.rdfxml.renderer.IllegalElementNameException: Illegal Element Name (Element Is Not A QName):
http://one.ugent.be/00061
http://one.ugent.be/00073
http://one.ugent.be/00051
http://one.ugent.be/00068
http://one.ugent.be/00057
http://one.ugent.be/00077
http://one.ugent.be/00067
http://one.ugent.be/00023
http://one.ugent.be/00001
http://one.ugent.be/00034
http://one.ugent.be/00028

I’ve created an issue in our Github tracker that details our progress on working to resolve it:

https://github.com/ncbo/bioportal-project/issues/87

There is a similar issue in our system with an identical error, but I haven’t found the exact solution in the tracker history.

https://github.com/ncbo/bioportal-project/issues/16

I need to consult on this further with my colleagues, one of which, unfortunately, is on vacation until August 30th. I’ll try to keep you posted on what further I find out.

Thanks!

Michael



----------------------------------------------------
Michael Dorf
Chief Software Architect
The National Center for Biomedical Ontology
Stanford Biomedical Informatics Research
mdorf at stanford.edu<mailto:mdorf at stanford.edu>
O: 650-723-0357
M: 650-995-4374
----------------------------------------------------

On Aug 20, 2018, at 3:13 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:


Name: chen.yang at ugent.be<mailto:chen.yang at ugent.be>

Email: chen.yang at ugent.be<mailto:chen.yang at ugent.be>

Location: http%3A%2F%2Fbioportal.bioontology.org<http://2Fbioportal.bioontology.org>%2Fontologies%2FNEST

Feedback:

Dear,
I submitted the newest version of NEST ontology. I tested it before uploading, no error was detected. However, it is marked as error rdf in BioPortal. http://bioportal.bioontology.org/ontologies/NEST
Best,
Chen

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