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[bioontology-support] [BioPortal] Feedback from Tatsuya Kushida

Tatsuya Kushida kushida at biosciencedbc.jp
Fri Dec 7 14:29:15 PST 2018


Hello Jennifer, and John,

Thank you for your quick response. I'm afraid that I can't use the
SPARQL endpoint, but I will attempt to use the API.

Best regards,
Tatsuya
2018年12月8日(土) 3:22 Jennifer Leigh Vendetti <vendetti at stanford.edu>:
>
> Hello Tatsuya,
>
> You might be interested to look at BioPortal's REST API. The API is actively supported and allows you to access your current ontology data, e.g.:
>
> http://data.bioontology.org/ontologies/IOBC
>
> The API is documented here:
>
> http://data.bioontology.org/documentation
>
> Kind regards,
> Jennifer
>
>
>
> On Dec 7, 2018, at 7:47 AM, John Graybeal <jgraybeal at stanford.edu> wrote:
>
> Hello,
>
> We're sorry, but we have not updated the Beta SPARQL end point for quite some time. We hope to bring up a new endpoint in the future, but the SPARQL endpoint is not currently a supported product for BioPortal.
>
> John
>
>
> On Dec 7, 2018, at 1:10 AM, support at bioontology.org wrote:
>
> Name: Tatsuya Kushida
>
> Email: kushida at biosciencedbc.jp
>
> Location: http://sparql.bioontology.org/
>
>
> Feedback:
>
> I'm a researcher from National Bioscience Database Center of Japan Science and Technology Agency. I registered my ontology "IOBC" (http://bioportal.bioontology.org/ontologies/IOBC) in BioPortal. However when I performed the following SPARQL query using BioPortal SPARQL endpoint (http://sparql.bioontology.org/), I couldn't find "IOBC". How can I find "IOBC"?
>
> ### my performed SPARQL query ###
> PREFIX omv:
> PREFIX xsd:
> SELECT distinct *
> WHERE {
> ?ont a omv:Ontology .
> ?ont omv:acronym "IOBC"^^xsd:string .
> }
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
> ========================
> John Graybeal
> Technical Program Manager
> Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
> 650-736-1632
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>


-- 
櫛田達矢(Tatsuya Kushida)
国立研究開発法人 科学技術振興機構(JST)
バイオサイエンスデータベースセンター(NBDC)
102-0081 東京都千代田区四番町5-3
TEL: 03-5214-8491 FAX: 03-5214-8470
mob: 090-6199-2657
kushida at biosciencedbc.jp


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