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[bioontology-support] labels for Time ontology
jgraybeal at stanford.edu
Thu Feb 8 21:35:19 PST 2018
(not sure if you got copied on that first response, which is below)
Is it reasonable to think the Time ontology might get labels any time soon, which would save us from having to troubleshoot this? (Just a shot in the dark, in case there are plans.)
On Feb 8, 2018, at 5:54 PM, Jennifer Leigh Vendetti <vendetti at stanford.edu<mailto:vendetti at stanford.edu>> wrote:
On Feb 8, 2018, at 4:18 PM, support at bioontology.org<mailto:support at bioontology.org> wrote:
Name: Simon Cox
Email: simon.cox at csiro.au<mailto:simon.cox at csiro.au>
I tried to register the W3C OWL-Time ontology last year.
Its listed here http://bioportal.bioontology.org/ontologies/TIME
Something went wrong, but I do not understand the error message.
In particular the class tree does not render properly.
This is now a W3C 'Recommendation' so I think merits listing in BioPortal.
I looked at the latest submission for the TIME ontology. During the parsing process in BioPortal, we have some code that generates labels for any classes don’t have labels declared. After generating that data, an error occurs when the system attempts to load it into the triplestore. The error is rather deep in the stack, and it wasn’t immediately obvious to me what the problem is. I’ve entered an issue in our tracker:
… so that we can spend some time debugging.
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bioontology-support at lists.stanford.edu<mailto:bioontology-support at lists.stanford.edu>
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
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