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[bioontology-support] [BioPortal] Feedback from Andrey Fedorov

Andrey Fedorov andrey.fedorov at gmail.com
Mon Feb 12 13:32:11 PST 2018


John, thank you for the reply. I will see if I can do more
comprehensive profiling.

I also cc David Clunie, who has also always been mentioning how slow
BioPortal is. Perhaps he can chime in.

On Sun, Feb 11, 2018 at 5:53 PM, John Graybeal <jgraybeal at stanford.edu> wrote:
> Andrey,
>
> To answer this question in a useful way (not just "yes"), we'd need to hear
> more details about your use case, including the exact queries you're trying
> to answer, and when and for how long it has seemed slow.
>
> Many of the queries can be expected to take seconds to tens of seconds,
> because they have to perform a lot of computations and/or transmit a lot of
> data. (When I look at the class list in DICOM, it seems to take a while, but
> it's sending information about more than 3000 terms over my slow DSL...)
>
> So if you can post some example queries (or indicate what web page you're
> trying to access), and tell us your expectations in terms of response time,
> we can tell whether we need to troubleshoot something, and if so, what.
> Thanks!
>
> John
>
> On Feb 10, 2018, at 9:43 AM, support at bioontology.org wrote:
>
> Name: Andrey Fedorov
>
> Email: andrey.fedorov at gmail.com
>
> Location:
> http%3A%2F%2Fbioportal.bioontology.org%2Fontologies%2FDCM%3Fp%3Dclasses%26conceptid%3Dhttp%253A%252F%252Fdicom.nema.org%252Fresources%252Fontology%252FDCM%252F113206
>
>
> Feedback:
>
> Can anything be done to make BioPortal queries faster? It literally takes
> seconds to get a response.
>
>
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
> ========================
> John Graybeal
> Technical Program Manager
> Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
> 650-736-1632
>
>


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