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[bioontology-support] NCBO Mappings

Kenneth Babu babuken at gmail.com
Sun Jul 1 05:31:08 PDT 2018


Hi Michael,
Is it possible to perform a mapping of an  ontology in a local disk
against NCBO ontologies. Say if I have a local ontology in OWL/OBO format
is possible to find matching terms in other ontologies that are available
on the NCBO Rest API?


On Sun, Jul 1, 2018 at 12:23 PM, Kenneth Babu <babuken at gmail.com> wrote:

> Thanks Michael. I'll have a look.
>
> On Fri, Jun 29, 2018 at 8:32 PM, Michael Dorf <mdorf at stanford.edu> wrote:
>
>> Hi Kenneth,
>>
>> Here is a paper that describes the LOOM mapping algorithm in depth. It’s
>> a bit dated, but the LOOM algorithm hasn’t really changed since then:
>>
>> https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815474/
>>
>> And here is our basic Wiki page that has a concise description:
>>
>> https://www.bioontology.org/wiki/BioPortal_Mappings
>>
>> Hope these work for you.
>>
>> Thanks!
>>
>> Michael
>>
>>
>> On Jun 29, 2018, at 8:58 AM, Kenneth Babu <babuken at gmail.com> wrote:
>>
>> Hi Michael,
>> Is there an article that describes the mapping algorithm? I see the
>> source as 'LOOM'. I'd very much like to have a look at the algorithm.
>>
>>
>>
>
>
> --
> Kenneth Babu Opap
> CBIO Division
> Integrated Biomedical Sciences Dept.
> Health Sciences Campus
> University of Cape Town
> Werner Beit North
> N1.04.1
> Observatory
> Cape Town,
> South Africa
>
>
>


-- 
Kenneth Babu Opap
CBIO Division
Integrated Biomedical Sciences Dept.
Health Sciences Campus
University of Cape Town
Werner Beit North
N1.04.1
Observatory
Cape Town,
South Africa
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