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[bioontology-support] [BioPortal] Feedback from dawn

John Graybeal jgraybeal at stanford.edu
Thu Jul 12 12:58:29 PDT 2018


Dawn,

If you go to the BioPortal front page and enter NS5a into the "Search for a class" box, you will arrive at this page:
  http://bioportal.bioontology.org/search?utf8=%E2%9C%93&query=NS5a&button=<http://bioportal.bioontology.org/search?utf8=✓&query=NS5a&button=>

None of us are domain experts, so I can't guess which of those is the one you want. But if you click on the links you can see each of these terms, including their ID, class, long and short names, and you can decide for yourself the best match. For example clicking on the LOINC entry takes you to http://bioportal.bioontology.org/ontologies/LOINC?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FLNC%2FLP220405-7<http://bioportal.bioontology.org/ontologies/LOINC?p=classes&conceptid=http://purl.bioontology.org/ontology/LNC/LP220405-7> which shows many of those attributes; other concepts in other ontologies might be a better fit, or might have more of the attributes you need.

John



On Jul 12, 2018, at 7:18 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:


Name: dawn

Email: dninness at nethealth.com<mailto:dninness at nethealth.com>

Location: http%3A%2F%2Fbioportal.bioontology.org<http://2Fbioportal.bioontology.org>%2Fontologies%2FLOINC%3Fp%3Dclasses%26conceptid%3Dhttp%253A%252F%252Fpurl.bioontology.org<http://252Fpurl.bioontology.org>%252Fontology%252FLNC%252FLP220405-7

Feedback:

Looking for the ID#, Class, Long and Short Name for :

Hepatitis C virus genotype 1 NS5a gene

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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632


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