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[bioontology-support] Ontology mapping

Tatsuya Kushida kushida at biosciencedbc.jp
Mon Jul 23 03:22:45 PDT 2018


Hello Jennifer,

I'm sorry.
There was an error in the previous email so I will resend it.


Thank you so much for useful information.

I'd like to get the total count of mappings between IOBC and MESH.
So, I ran the following API,
http://data.bioontology.org/mappings/?ontologies=IOBC,MESH .
However the result was "totalCount: 0".

On the other hand, I ran the following API,
http://data.bioontology.org/ontologies/IOBC/classes/http%3A%2F%2Fpurl.jp%2Fbio%2F4%2Fid%2F200906053522984593/mappings
.
As a result, I found one mapping between IOBC and MESH, namely
"http://purl.jp/bio/4/id/200906053522984593", and
"http://purl.bioontology.org/ontology/MESH/D019853".

How can I get the total count of mappings between IOBC and MESH all at once?



2018-07-23 19:03 GMT+09:00 Tatsuya Kushida <kushida at biosciencedbc.jp>:
> Hello Jennifer,
>
> Thank you so much for useful information.
>
> I'd like to get the total count of mappings between IOBC and MESH.
> So, I ran the following API,
> http://data.bioontology.org/mappings/?ontologies=IOBC,MESH .
> However the result was "totalCount: 0".
>
> On the other hand, I ran the following API,
> http://data.bioontology.org/ontologies/IOBC/classes/http%3A%2F%2Fpurl.jp%2Fbio%2F4%2Fid%2F200906026623112891/mappings
> .
> As a result, I found one mapping between IOBC and MESH, namely
> "http://purl.jp/bio/4/id/200906053522984593" and
> "http://purl.bioontology.org/ontology/MESH/D019853".
>
> How can I get the total count of mappings between IOBC and MESH all at once?
>
> Best regards,
> Tatsuya
>
>
> --
> Tatsuya Kushida, Ph.D.
> National Bioscience Database Center (NBDC),
> Japan SCIENCE AND TECHNOLOGY AGENCY (JST)
> 5-3, Yonbancho, Chiyoda-ku, Tokyo 102-0081, JAPAN
> Phone: +81 3 5214 8491 FAX: 81 3 5214 8470
> http://www.jst.go.jp/EN/index.html
> http://biosciencedbc.jp/en/
> t2kushida at jst.go.jp
> kushida at biosciencedbc.jp
>
>
>
>
> 2018-07-10 1:38 GMT+09:00 Jennifer Leigh Vendetti <vendetti at stanford.edu>:
>> Hello Tatsuya,
>>
>>
>> On Jul 8, 2018, at 4:40 PM, Tatsuya Kushida <kushida at biosciencedbc.jp>
>> wrote:
>>
>> Dear BioPortal staffs,
>>
>> I'm a developer of IOBC (http://purl.bioontology.org/ontology/IOBC).
>> Can I ask you a question? How can I do mapping my ontology terms to
>> other ontology ones?
>>
>>
>>
>> Mappings are automatically generated when you submit an ontology to
>> BioPortal. You can also manually create mappings using our REST API:
>>
>> http://data.bioontology.org/documentation#Mapping
>>
>> We have example code for programmatically creating mappings in our GitHub
>> sample code repository:
>>
>> https://github.com/ncbo/ncbo_rest_sample_code/blob/master/java/src/CreateMapping.java
>>
>>
>>
>> I worry that my ontology mapping fully has not
>> been done yet
>> (https://bioportal.bioontology.org/ontologies/IOBC/?p=mappings).
>>
>>
>>
>> If you let us know what you think is missing, we could perhaps better
>> comment on this point.
>>
>> Kind regards,
>> Jennifer
>>
>>

--
Tatsuya Kushida, Ph.D.
National Bioscience Database Center (NBDC),
Japan SCIENCE AND TECHNOLOGY AGENCY (JST)
5-3, Yonbancho, Chiyoda-ku, Tokyo 102-0081, JAPAN
Phone: +81 3 5214 8491 FAX: 81 3 5214 8470
http://www.jst.go.jp/EN/index.html
http://biosciencedbc.jp/en/
t2kushida at jst.go.jp
kushida at biosciencedbc.jp


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