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[bioontology-support] problem with ontology submission - please help!

Pan, Huaqin (Helen) hpan at rti.org
Wed Mar 28 14:18:01 PDT 2018


Hi Michael,

I noticed one error. The name/title of the http://bioportal.bioontology.org/ontologies/LUNGMAP-HUMAN ontology needs to be updated:

Anatomic Ontology for Alveolar Development and Maturation in the Mouse Human Lung Maturation

Thank you!
Helen

From: Michael Dorf [mailto:mdorf at stanford.edu]
Sent: Wednesday, March 28, 2018 12:39 PM
To: Pan, Huaqin (Helen) <hpan at rti.org<mailto:hpan at rti.org>>
Cc: John Graybeal <jgraybeal at stanford.edu<mailto:jgraybeal at stanford.edu>>; support at bioontology.org<mailto:support at bioontology.org>
Subject: Re: [bioontology-support] problem with ontology submission - please help!

Hi Pan,

I've re-submitted your ontology under the correct acronym, LUNGMAP-HUMAN. I've also deleted all the extraneous records (LUNGMAP-, LUNGMAP-HUMAN1, LUNGMAP_HUMAN, LUNGMAP_HUMAN2, LUNGMAP--HUMAN). Your ontology is now browsable here:

http://bioportal.bioontology.org/ontologies/LUNGMAP-HUMAN

Please contact us if you run into further issues.

Thank you for using BioPortal!

Michael



----------------------------------------------------
Michael Dorf
Chief Software Architect
The National Center for Biomedical Ontology
Stanford Biomedical Informatics Research
mdorf at stanford.edu<mailto:mdorf at stanford.edu>
O: 650-723-0357
M: 650-995-4374
----------------------------------------------------


On Mar 28, 2018, at 7:32 AM, Pan, Huaqin (Helen) <hpan at rti.org<mailto:hpan at rti.org>> wrote:

Hi John,

Thank you for helping me creating the http://purl.bioontology.org/ontology/LUNGMAP-HUMAN1. It looks good and I can access it!

I can find the 5 other "unsuccessful" attempts (highlighted below) when I search for "lungmap" at the public site, but I can't delete them before I login in, and I can't find them after I log in. would you please help me delete these 5, and change the name of the successful submission you did above by removing the "1" at the end?

<image002.jpg>

I greatly appreciate your help!

Helen


From: John Graybeal [mailto:jgraybeal at stanford.edu]
Sent: Saturday, March 24, 2018 5:51 PM
To: Pan, Huaqin (Helen) <hpan at rti.org<mailto:hpan at rti.org>>
Cc: support at bioontology.org<mailto:support at bioontology.org>
Subject: Re: [bioontology-support] problem with ontology submission - please help!

Helen,

I have submitted your OWL file under the LUNGMAP-HUMAN1 acronym, and got the results below [1]. I did not get any error messages.

Note that you probably will want to redo your submission under the same acronym but leaving off the '1'. Once that is successful, we can delete this ontology.

I am wondering when you attempted your submissions. If you submitted it before late Thursday, we were having problems with the system up until that point, and these were likely interfering with your efforts.

When you try to submit under LUNGMAP-HUMAN, please keep track of the Add Submission process as you go, and let us know if there are any issues.

Thanks,

John

[1]  Results of submission:

Thank you for submitting your ontology to BioPortal.
We will now put your ontology in the queue to be processed. Please keep in mind that it may take up to several hours before BioPortal users will be able to explore and search your ontology.
When your ontology is ready for viewing, it will be available here:
http://bioportal.bioontology.org/ontologies/LUNGMAP-HUMAN1
If you have any questions or problems, please email the BioPortal support team at support at bioontology.org<mailto:support at bioontology.org>

On Mar 24, 2018, at 7:38 PM, Pan, Huaqin (Helen) <hpan at rti.org<mailto:hpan at rti.org>> wrote:

Hello,

Hello, I tried several times to submit an ontology:

initial submission always got
<image002.jpg>
Another try always got
<image004.jpg>

It repeats that when I tried different name/acronyms on different web browsers.

Would you please help me create the ontology?
Name: Anatomic Ontology for Alveolar Development and Maturation in the Mouse Lung
Acronym: LUNGMAP-HUMAN
Public
Anatomy

Owl is attached.

Thanks!
Helen


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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632

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<Human_Cell_Ontology_bioportal.owl><Mouse_Cell_Ontology_bioportal.owl>

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