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[bioontology-support] [BioPortal] Feedback from David Rogers

Rogers, David W drogers at fredhutch.org
Thu May 10 15:40:57 PDT 2018


Hello Jennifer,

We have numerous projects which use REDCap to select CTCAE ontologies provided through BioPortal. Much like ICD codes, one doesn’t normally switch to a different version (e.g., ICD9 –> ICD10) in the middle of a research study. My request is for you guys to do the same thing with CTCAE as you have done with ICD codes – provide multiple versions – at least the most recent prior version as well as the current version in the api. So I would see CTCAE and CTCAE4 in the list of available ontologies.

Thanks,
David
--
David W. Rogers
Software Developer / Collaborative Data Services / 206.667.7089 / drogers at fredhutch.org / Fred Hutch / Cures Start Here

General CDS help: CdsHelp at fredhutch.org<mailto:CdsHelp at fredhutch.org> or REDCap-specific help: REDCapHelp at fredhutch.org<mailto:REDCapHelp at fredhutch.org>

From: Jennifer Leigh Vendetti <vendetti at stanford.edu>
Sent: Thursday, May 10, 2018 1:17 PM
To: support at bioontology.org
Cc: Rogers, David W <drogers at fredhutch.org>
Subject: Re: [bioontology-support] [BioPortal] Feedback from David Rogers

Hello David,



On May 10, 2018, at 12:48 PM, support at bioontology.org<mailto:support at bioontology.org> wrote:

Name: David Rogers
Email: drogers at fredhutch.org<mailto:drogers at fredhutch.org>
Location: https%3A%2F%2Fbioportal.bioontology.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__2Fbioportal.bioontology.org&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=WgUuXEZxxnXFMyW7y9PgsrcZI3Wdrk7U4ztbdTbhVmo&m=uOSdQ7inwHPMjFHBV1swSL2PE77Vwrk-Zovojy2KX4w&s=Gq015MwjmUImQxRO6XRrljmklSvDscRUKmkzy9WPcsQ&e=>%2Fontologies%2FCTCAE

Feedback:
Is it possible to get versioning for the CTCAE Ontology? For at least one prior version?

Could you be more specific about your needs?

The BioPortal REST API serves content from the latest submission of each of the ontology entries in our system. Currently we’re serving v5.0 of CTCAE. All previous versions (4.0.3, 4.0.2) are still available as file downloads though, e.g.:

http://data.bioontology.org/ontologies/CTCAE/submissions/2/download<https://urldefense.proofpoint.com/v2/url?u=http-3A__data.bioontology.org_ontologies_CTCAE_submissions_2_download&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=WgUuXEZxxnXFMyW7y9PgsrcZI3Wdrk7U4ztbdTbhVmo&m=uOSdQ7inwHPMjFHBV1swSL2PE77Vwrk-Zovojy2KX4w&s=EKI8mxTquTsEfs5dpGJIeJ0GBZFgVzQVdVpcMcqz6Vs&e=>
http://data.bioontology.org/ontologies/CTCAE/submissions/1/download<https://urldefense.proofpoint.com/v2/url?u=http-3A__data.bioontology.org_ontologies_CTCAE_submissions_1_download&d=DwMGaQ&c=eRAMFD45gAfqt84VtBcfhQ&r=WgUuXEZxxnXFMyW7y9PgsrcZI3Wdrk7U4ztbdTbhVmo&m=uOSdQ7inwHPMjFHBV1swSL2PE77Vwrk-Zovojy2KX4w&s=MrSGhEj93ue2WrLNaVgV1o7lc6lqdDskN4u8RVW2MLc&e=>


Kind regards,
Jennifer

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