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[bioontology-support] Keeping track of the text corresponding to the annotated ontology classes?

Michael Dorf mdorf at stanford.edu
Wed Nov 7 11:42:08 PST 2018


Hi Michael,

Thank you for contacting us. The annotator service does return the annotated string for each class along with the start and end index of where the string occurred in the text (in the “annotations” list):

http://data.bioontology.org/annotator?text=Lung%20cancer%20occurs%20in%20non-smokers&longest_only=true&exclude_numbers=false&whole_word_only=true&exclude_synonyms=false

[cid:E07F55C1-B460-4E6C-8CD1-3F0E8CEFFDCF at stanford.edu]

Were you looking for a different output?

Thanks!

Michael


On Nov 6, 2018, at 12:26 AM, Michael Liu <megapode32559 at gmail.com<mailto:megapode32559 at gmail.com>> wrote:

Hi,

It seems that the annotator endpoint only returns the relevant
classes, but does not return the corresponding text. Is there a way to
return the corresponding text along with the relevant classes? Thanks.

http://data.bioontology.org/documentation#nav_annotator

--
Best wishes,
Michael
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