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[bioontology-support] OntoPortal visualization module

Madani, Sina Sina.Madani at
Thu Apr 4 14:51:06 PDT 2019

Thank you very much Jennifer!

Another thing that I noticed today is that the visualizer only shows 3 types of arcs: part-of, is-a, and mapping. Not sure if this is by design but showing arcs from object properties included in an ontology would be great.


On Apr 4, 2019, at 4:45 PM, Jennifer Leigh Vendetti <vendetti at<mailto:vendetti at>> wrote:

Hello Sina,

Yes, that wiki page is still valid. I looked at another installation of the virtual appliance, and the issues you reported below with the visualization software are present there as well. We’ve entered a couple of issues in our tracker so that we can look into it:<><>

Kind regards,

On Apr 4, 2019, at 9:45 AM, John Graybeal <jgraybeal at<mailto:jgraybeal at>> wrote:

From: "Madani, Sina"
Date: Tuesday, April 2, 2019 at 11:45 AM
Subject: Re: OntoPortal visualization module


Is the content in this wiki page still valid for OntoPortal 2.5 and/or do we need to activate visualization module in our local version of OntoPortal? The “Menu” icon in visualization context that is mentioned in the page doesn’t seem to exist in the frame and “mapping neighborhood” always remain in the “connecting” mode without any result (for two very small local ontologies).<>




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