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[bioontology-support] Help Loading my ontology to the

Jennifer Leigh Vendetti vendetti at
Tue Apr 23 19:10:20 PDT 2019

Hi Dan,

Apologies if it wan’t clear from my first message that we believe the problem is on our end, not with your ontology.

As of end of business today, we were able to reproduce the error in our local development environment. Unfortunately it’s something we haven’t encountered before, and will need time to debug / troubleshoot the code. I’ll update you with any progress we’re able to make.

Kind regards,

On Apr 23, 2019, at 5:37 AM, Daniel Hier <dbhier at<mailto:dbhier at>> wrote:

Thanks for your help with NEO ontology.  I gave you permission to view ontology on Web Protege at
I tried to recheck for errors again and reload without success to the BioPortal.


On Mon, Apr 22, 2019 at 7:30 PM Daniel Hier <dbhier at<mailto:dbhier at>> wrote:
Thank you Jennifer
I am rechecking my ontology for errors.
Thank you again!
I may have a mix of IRI formats
I wonder if that is problematic?

Sent from my iPhone

On Apr 22, 2019, at 6:59 PM, Jennifer Leigh Vendetti <vendetti at<mailto:vendetti at>> wrote:

Hello Daniel,

Typically if ontologies load successfully in Protege, they will also load in BioPortal. I looked at our parsing logs for your NEO ontology, and I encountered some unusual error messages. I’ve entered an issue in our tracker:

We’re actively looking into the underlying cause and will update you when we’re able to get your ontology loaded.

Apologies for the inconvenience.

Kind regards,

On Apr 22, 2019, at 6:32 AM, Daniel Hier <dbhier at<mailto:dbhier at>> wrote:

Can you help me get my ontology to parse for the BioPortal?  I must be doing something wrong.  I took the Protege short course at Stanford in March in order to finish my ontology for the neurological examination.  I successfully loaded it to the Web Protege website but can't get it to parse in the BioPortal website.  I attached screen shots.  I saved it in RDF/XML owl format but it won't load.  Thanks again for your help.  The acronym is NEO. (neurologic examination ontology).

Daniel B Hier MD
<web protege.pdf><Ontology.pdf><Neurologic Examination Ontology.pdf>_______________________________________________
bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

Daniel B Hier MD

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