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[bioontology-support] [BioPortal] Feedback from fergusonch

Jennifer Leigh Vendetti vendetti at
Fri Apr 26 15:57:02 PDT 2019

Hello Chris,

We accept ontologies in OWL, OBO, or SKOS. Could you send me a copy of the OWL file that you’d like to load in BioPortal? I see you submitted one earlier that parsed, but I assume that’s not your latest version. Doing a conversion to TTL isn’t necessary / desirable.

Kind regards,

On Apr 24, 2019, at 7:04 AM, support at<mailto:support at> wrote:

Name: fergusonch

Email: ferguson_christopher at<mailto:ferguson_christopher at>




I am created a private test ontology (acronym: PTEST/name: PAT Test) in anticipation for a new public submission, but I am running into errors trying to get the classes to display. I had initially tried a terminology I created in Protege, but ran into a problem with retrieving classes after upload (uploaded as a .owl file). I think created a smaller test file in WebProtege, which worked and is currently what occupies the Classes tab. I made some changes to my original ontology in an effort to address the problem, but now that ontology has the status of "Uploaded, Error Rdf". I did try uploading a .ttl file most recently, but it was an output from Protege so I was hoping that wasn't a problem.

Sorry for the long comment, just wanted to give as much detail as possible. I was hoping to get some guidance on what features of my ontology might be causing the problem with prasing, indexing and class retrieval. Any guidance you can provide would be greatly appreciate!

Thank you,

Email: ferguson_christopher at<mailto:ferguson_christopher at>

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