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[bioontology-support] MI update on Bioportal?

John Zobolas john.zobolas at ntnu.no
Fri Feb 8 03:57:15 PST 2019


Hi,

The issue is that the MI ontology in the OBOfoundry page<http://obofoundry.org/ontology/mi.html> is updated but the BioPortal version?<https://bioportal.bioontology.org/ontologies/MI> in not synced yet to the current/newest version. Could you please update it?

BR, John
________________________________________
From: Pablo Porras Millan <pporras at ebi.ac.uk>
Sent: Friday, February 8, 2019 12:41 PM
To: Vasundra Touré; Sandra Orchard (orchard at ebi.ac.uk)
Cc: John Zobolas
Subject: Re: MI update on Bioportal?

Dear Vasundra,

I have no idea how BioPortal gets updated, but our reference github repo
is up to date and shows the latest version of the CV in OLS:
https://www.ebi.ac.uk/ols/ontologies/mi/terms?iri=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMI_2233.
Our OBOfoundry page also seems tobe up to date
(http://obofoundry.org/ontology/mi.html).

We have never updated BioPortal manually and I am certainly not willing
to start now, so I assume they have some sort of procedure to do these
updates. Can you use an alternative source for theCV?

Cheers,

Pablo.



On 08/02/2019 08:28, Vasundra Touré wrote:
> Dear Pablo and Sandra,
>
> I have looked at the MI terms in Bioportal and it seems like they are
> not updated. (see Causal Regulatory Mechanism branch
> https://bit.ly/2DYI5VM).
>
> Isn't it suppose to be an automatic update from Bioportal? Or do you
> have to submit the changes from your side?
>
> Just wanted to point out this issue.
>
> Thanks!
>
> Best regards,
> Vasundra
>

--
------------------------------------------------------
Pablo Porras Millán, Ph.D.
Molecular Interactions Team Coordinator
European Molecular Biology Laboratory
European Bioinformatics Institute (EMBL-EBI)
Wellcome Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom
Tel:    +44 1223 494482
email:  pporras at ebi.ac.uk
URLs:   www.ebi.ac.uk/about/people/pablo-porras-millan<http://www.ebi.ac.uk/about/people/pablo-porras-millan>
        www.ebi.ac.uk/intact<http://www.ebi.ac.uk/intact>
        www.ebi.ac.uk/complexportal<http://www.ebi.ac.uk/complexportal>
-------------------------------------------------------

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