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[bioontology-support] [BioPortal] Feedback from Brian Aevermann

Jennifer Leigh Vendetti vendetti at
Thu Jul 18 13:20:37 PDT 2019

Hi Brian,

I think the problem may have been a corrupt value in our cache that stores the root classes. I reprocessed the latest submission of PCL and flushed our application caches. The class tree is now displaying without issue in BioPortal. Feel free to contact us again if you see any further issues.

Kind regards,

[cid:D6D32873-4BA4-4DE1-9F60-6FBC7CE7061A at]

On Jul 18, 2019, at 12:51 PM, Aevermann, Brian <baeverma at<mailto:baeverma at>> wrote:


Much appreciated! I will hold off for the moment as we are deliberating on the content of our next update. If you could please take a look at the current version and investigate why the classes are no longer displaying (they were displaying previously), it would be a big help to us.

Thanks again!!

Brian Aevermann

Brian Aevermann
Bioinformatics Analyst
J. Craig Venter Institute
4120 Capricorn Lane
La Jolla, CA 92037

From: Jennifer Leigh Vendetti <vendetti at<mailto:vendetti at>>
Date: Thursday, July 18, 2019 at 12:47 PM
To: NCBO User Support <support at<mailto:support at>>
Cc: "Aevermann, Brian" <baeverma at<mailto:baeverma at>>
Subject: Re: [bioontology-support] [BioPortal] Feedback from Brian Aevermann

Hello Brian,

Yes - I just gave you administrative access to PCL. You may have to refresh your browser to see the edit buttons.

I took a quick look at the parsing log file for the last submission of this ontology and it wasn’t immediately clear to me what the issue was. Were you planning to upload a new version? If so, I’ll hold off on further investigation. If not, let me know, as we’ll need to troubleshoot the current version in BioPortal.

Kind regards,

On Jul 18, 2019, at 12:12 PM, support at<mailto:support at> wrote:

Name: Brian Aevermann
Email: baeverma at<mailto:baeverma at>

The ontology located at is not displaying the classes properly. A colleague of mine was maintaining it; however he has left my institute. Can I get Read/write permission assigned to me so I can try to fix it?
Brian Aevermann

bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

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