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[bioontology-support] MONDO ontology submission 39 empty on bioontology? (http://data.bioontology.org/ontologies/MONDO/classes)

Chris Mungall cjmungall at lbl.gov
Thu Jun 6 17:21:52 PDT 2019


Simon does the same for OLS, I expect it's the equivalence axioms

On Thu, Jun 6, 2019 at 3:20 PM Jennifer Leigh Vendetti <
vendetti at stanford.edu> wrote:

> Hi again Brian,
>
> After some initial investigation, it’s apparent that our system is
> struggling to handle mondo.owl, and diagnosing / fixing the issue isn’t
> altogether trivial. I’ve uploaded the OBO version of MONDO (mondo.obo)
> until such time that we’re able to have a more in depth look at the issue.
> BioPortal processes mondo.obo w/out issue, so the classes are fully
> available from the UI and/or the REST endpoint, e.g.:
>
> *https://bioportal.bioontology.org/ontologies/MONDO?p=classes
> <https://bioportal.bioontology.org/ontologies/MONDO?p=classes>*
>
> http://data.bioontology.org/ontologies/MONDO/classes/
>
>
> http://data.bioontology.org/ontologies/MONDO/classes/http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMONDO_0004992/ancestors
> <http://data.bioontology.org/ontologies/MONDO/classes/http://purl.obolibrary.org/obo/MONDO_0004992/ancestors>
>
> Jennifer
>
>
>
> On Jun 4, 2019, at 1:20 PM, Jennifer Leigh Vendetti <vendetti at stanford.edu>
> wrote:
>
> Hello Brian,
>
> Thanks for reporting that. I’ve entered an issue in our tracker so that we
> can have a look: https://github.com/ncbo/bioportal-project/issues/125.
>
> Apologies for the inconvenience.
>
> Jennifer
>
>
> On Jun 4, 2019, at 10:30 AM, Brian Walsh <walsbr at ohsu.edu> wrote:
>
>
> Receiving 404 errors attempting to look up a MONDO class by id
>
> curl
> http://data.bioontology.org/ontologies/MONDO/classes/MONDO:0004992/ancestors?apikey=XXXXXXXXX
> {"errors":["Resource 'MONDO:0004992' not found in ontology MONDO
> submission 39"],"status":404}
>
> When I examine
>
> http://data.bioontology.org/ontologies/MONDO/classes
>
> It looks like all pages are empty?
>
>
> Thanks very much,
>
> -Brian
>
>
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