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[bioontology-support] MED-RT

Jennifer Leigh Vendetti vendetti at stanford.edu
Tue Jun 25 14:01:11 PDT 2019


Hi Samson,

Our Python script that converts UMLS to TTL files didn’t handle MED-RT very well. There’s a ticket GitHub with more details:

https://github.com/ncbo/umls2rdf/issues/27

Unfortunately we haven’t had the bandwidth to investigate this yet. Apologies that we don’t have a better answer for you.

Jennifer



On Jun 24, 2019, at 10:35 PM, Samson Tu <swt at stanford.edu<mailto:swt at stanford.edu>> wrote:

Hi,

MED-RT in UMLS is supposed to be a replacement and successor to NDF-RT. Since I use NDF-RT a lot, I am quite pleased that Bioportal finally includes MED-RT. However, instead of a full-featured drug knowledge base/ontology of drug information, MED-RT contains only 127 skeletal classes. What went wrong?

With best regards,
Samson

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