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[bioontology-support] [BioPortal] Feedback from shruthichari
charis at rpi.edu
Fri Apr 24 16:23:03 PDT 2020
I don't want it to be a view yes. Thanks for making the change.
As for the RDF parsing error, I am not sure what is happening. Can you
send me the log as I don't see to it on my end. I don't see errors on
Protege per se it opens there. I am attaching a screenshot for your
However, I want to make some import clean up changes so I will work on
that and hopefully it should render better?
Not sure why it doesn't render on Bioportal though.
On 2020-04-24 19:06, John Graybeal wrote:
> Ah, that explains it, thank you.
> I have changed the setting to not be View, and saved that. (It would
> have showed up previously, if you enabled the Views checkbox. But if
> it isn't a view that isn't what you want!)
> There may be some additional processing required as a result; I'll ask
> our expert on such things when she is back on Monday.
> I notice there are no classes being displayed, due to an RDF parsing
> error; do you understand why that is? Let us know if you need help
> figuring that out—my basic rule of thumb is to try opening it in
> Protege to see if that reports any errors, and fix all those first. If
> it works there but not in BioPortal, let us know and we'll try to hep.
>> On Apr 24, 2020, at 3:50 PM, Shruthi Chari <charis at rpi.edu> wrote:
>> Hi John,
>> Thanks so much for reassigning ownership to me, with this, I am
>> able to upload a new version. I have a problem in that my ontology
>> doesn't show up on Bioportal's main page as an ontology page as I
>> accidentally made it an ontology view. Can you help revert this
>> option and instead set it as an ontology?
>> On 2020-04-24 18:09, John Graybeal wrote:
>> Hi Shruthi,
>> I am happy to help you, and just want to clarify the situation.
>> I can see a public ontology called SCO that fits your description,
>> with you as the contact, and it seems to be publicly visible. So if
>> you are still having trouble seeing this ontology, can you please
>> provide further details about what you are doing?
>> It appears the owner of the ontology may have been mis-assigned
>> (possibly an operator error on our side); I have re-assigned you as
>> the owner.
>> My apologies for this issue. Please try to access it and let me
>> if you have any difficulty.
>> On Apr 24, 2020, at 12:47 PM, support at bioontology.org wrote:
>> Name: shruthichari
>> Email: charis at rpi.edu
>> Location: https%3A%2F%2Fbioportal.bioontology.org 
>> Hi Sir/Madam,
>> I had an ontology on Bioportal under the name, Study Cohort
>> and acronym, SCO. Not only can I not find it anymore but I can't
>> resubmit as somebody else has made a submission. I attest that I am
>> the author of this ontology and we even have a paper in the
>> International Semantic Web Conference (ISWC) last year:
>> https://arxiv.org/abs/1907.04358  . Can you please help me
>> resubmit my ontology?
>> Feel free to reach out to me at charis at rpi.edu
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> John Graybeal
>> Technical Program Manager
>> Center for Expanded Data Annotation and Retrieval /+/ NCBO
>> Stanford Center for Biomedical Informatics Research
>> 650-736-1632 | ORCID 0000-0001-6875-5360
>>  http://2Fbioportal.bioontology.org 
>>  https://arxiv.org/abs/1907.04358 
> John Graybeal
> Technical Program Manager
> Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
> Stanford Center for Biomedical Informatics Research
> 650-736-1632 | ORCID 0000-0001-6875-5360
>  http://2fbioportal.bioontology.org/
>  https://arxiv.org/abs/1907.04358
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