Search Mailing List Archives

Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] [BioPortal] Feedback from Jay Franklin

Jennifer Leigh Vendetti vendetti at
Mon Apr 27 10:26:24 PDT 2020

Hi Jay,

I looked at CMO in our system and it appears that the latest version (uploaded on January 7th) failed to parse. The status is showing as "Error Rdf”. This is the underlying reason that the Annotator doesn’t include results from this ontology. I’ve entered an issue in our tracker:

… and am looking into the parsing errors.

Kind regards.

On Apr 25, 2020, at 2:19 PM, support at<mailto:support at> wrote:

Name: Jay Franklin

Email: frankj7 at<mailto:frankj7 at>




It seems as though the Clinical Measurements Ontology (CMO) is not working correctly with the Annotator tool right now. Although I can select CMO in the drop-down list of ontologies, when I input biomedical text to be annotated CMO is never returned. For example, "diastolic blood pressure" does not return its corresponding IRI "".

Is this an error within the Annotator, or am I misusing the software somehow? I would like to use the Annotator with CMO, so please let me know if something can be done about this.

Jay Franklin
Rensselaer Polytechnic Institute

bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <>

More information about the bioontology-support mailing list