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[bioontology-support] batch annotation extraction?

Christopher F. Beaulieu beaulieu at
Tue Aug 4 14:09:12 PDT 2020


I have a need to try to match several very large lists of terms/short phrases with standardized annotations from the radiology RadLex ontology.

I can see how someone with programming expertise can work this out through the API or other resources on GitHub.   But what I wonder is if there is already an application
someone created out there for a similar task. Sorry but I am naive about programming but thought I’d check before enlisting a developer.

Ideally I’d like to provide a list and the return would be any matching RadLex terms with their RadLex ID’s as well.

thanks for any guidance,


Christopher F. Beaulieu MD, PhD
Professor of Radiology
Associate Chair of Education
Stanford University Medical Center
300 Pasteur Dr., S-056
Stanford, CA  94305
beaulieu at<mailto:beaulieu at>
650-725-8018 (voice)
650-725-7296 (fax)

p.s. example list attached (the numbers are irrelevant)

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