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[bioontology-support] [BioPortal] Feedback from rakesh
rakesh at pieriandx.com
Tue Aug 11 18:31:43 PDT 2020
Thanks! Can you confirm the last link where you refer to a script but
that link is the same as the previous link?
On Tue, Aug 11, 2020 at 6:18 PM Jennifer Leigh Vendetti <
vendetti at stanford.edu> wrote:
> Hi Rakesh,
> On Aug 10, 2020, at 5:18 PM, support at bioontology.org wrote:
> Name: rakesh
> Email: rakesh at pieriandx.com <rakesh at pieriandx.com>
> Location: https%3A%2F%2Fbioportal.bioontology.org%2F
> I am using v2.5 of the Ontoportal appliance and have successfully loaded
> NCIT a few times now. I am now attempting to load SNOMED-CT after
> conversion from the UMLS using umls2rdf as a .ttl file. I have selected
> UMLS as the format but I have now tried twice to upload via UI and the
> server threw an error saying 'something went wrong and administrators have
> been notified. However I dont know what happened. Are there logs on the
> server to check?
> There are some instructions for locating log files here:
> Any other ideas to help troubleshoot? Finally are there commands to load
> directly on the server I may use?
> I’m not certain this is what you’re asking for, but you can manually
> re-parse an ontology submission using this methodology:
> It’s also possible to upload ontologies programmatically. An appliance
> user submitted the following script to our code sample repository:
> It’s a script that imports ontologies from on appliance instance to
> another, which is not what you’re doing. However, I thought that some
> portions of the code might be of interest to you.
> Kind regards,
Founder, President, and Chief Technology & Visionary Officer
e: rakesh at pieriandx.com
linkedin_circle-512] <https://www.linkedin.com/in/rakeshnagarajan/> [image:
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