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[bioontology-support] [BioPortal] Load from URL failure for Fission Yeast Phenotype Ontology

John Graybeal jgraybeal at stanford.edu
Tue Feb 11 14:33:11 PST 2020


Hello Midori,

Thank you for this note. The system will retry automatically each night, and will only re-import the ontology if it has changed since the last successful import. The lack of an error email indicates the ontology was successfully acceseed by the system.

So, unless the ontology has changed since the successful February 7 upload, everything is operating as it should be.

Please let us know if you still see a concern. Thank you!

John

On Feb 10, 2020, at 2:29 AM, Dr Midori A. Harris <mah79 at cam.ac.uk<mailto:mah79 at cam.ac.uk>> wrote:

Hello,

On Sat, 8 Feb 2020, admin at bioontology.org<mailto:admin at bioontology.org> wrote:

BioPortal failed to load Fission Yeast Phenotype Ontology (FYPO) from URL:
https://raw.githubusercontent.com/pombase/fypo/master/release/fypo.owl.

This URL is correct, and is working for me now. Can you try the BioPortal load again?

Thank you,
Midori

Please verify the URL you provided for daily loading of your ontology:
1. Make sure you are signed in to BioPortal.
2. Navigate to your ontology summary page: http://bioportal.bioontology.org/ontologies/FYPO.
3. Click the "Edit submission information" link.
4. In the Location row, verify that you entered a valid URL for daily loading of your ontology in the URL text area.
If you need further assistance, please contact us via the BioPortal support mailing list.
Thank you,
The BioPortal Team


Midori A. Harris, PhD
Database Curator, PomBase
Department of Biochemistry
University of Cambridge
Cambridge, UK
mah79 at cam.ac.uk<mailto:mah79 at cam.ac.uk>
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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632  | ORCID  0000-0001-6875-5360



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