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[bioontology-support] Flexibility in term mapping (in virtual appliance)

John Graybeal jgraybeal at stanford.edu
Tue Feb 18 07:38:25 PST 2020


Hi Mark,

You can assert mappings using our REST API:

http://data.bioontology.org/documentation#Mapping

We have example code for programmatically creating mappings in our GitHub sample code repository:

https://github.com/ncbo/ncbo_rest_sample_code/blob/master/java/src/CreateMapping.java

John

On Feb 17, 2020, at 10:28 AM, Miller, Mark <markampa at pennmedicine.upenn.edu<mailto:markampa at pennmedicine.upenn.edu>> wrote:

I have a 2.4 virtual BioPortal appliance running in my lab now. Thanks!

How much configuration is possible with the term mapping? Or can manual mappings be added somewhere?

I would like to assert (or discover) that

http://purl.bioontology.org/ontology/<http://purl.bioontology.org/ontology/LNC/MTHU051577>LNC/LP14419-3 "Leukocytes" is the same as http://purl.obolibrary.org/obo/CL_0000738 "leukocyte"

and that

http://purl.bioontology.org/ontology/LNC/LP7057-5 "Bld" is the same as http://purl.obolibrary.org/obo/UBERON_0000178 "blood"

thanks,
Mark



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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632  | ORCID  0000-0001-6875-5360



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