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[bioontology-support] BioPortal mapping data

Jennifer Leigh Vendetti vendetti at
Thu Feb 20 18:12:38 PST 2020

Hello Erhard,

Unfortunately, we don’t offer mappings as file downloads. The mapping data isn’t persisted in our back-end storage mechanism. Rather, the mappings are materialized on the fly in response to REST API calls.

We’ve documented this as a feature request [1] in one of our GitHub repositories. As of yet, we haven’t been able to come up with the resources to have someone work on this. Apologies that I don’t have a better answer for you.

Kind regards,


On Feb 19, 2020, at 5:30 AM, Erhard Eibl <erhard.eibl at<mailto:erhard.eibl at>> wrote:

Dear Sir or Madam,

for a university project I would like to run a clustering algorithm on the BioPortal mapping data.
As my internet ist fairly slow and unstable using the API to download all mappings is unfortunately not an option.

Is there a way to directly download the mapping data (preferrably as JSON)?

Thank you in advance
Erhard Eibl
bioontology-support mailing list
bioontology-support at<mailto:bioontology-support at>

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