Search Mailing List Archives


Limit search to: Subject & Body Subject Author
Sort by: Reverse Sort
Limit to: All This Week Last Week This Month Last Month
Select Date Range     through    

[bioontology-support] [BioPortal] Feedback from Ning "Sunny" Shang

Sunny Shang sunnyshang001 at gmail.com
Fri Jan 17 08:37:29 PST 2020


Thank you very much, Michael! Yes, I will reply-all for the communications.
Best regards,
Sunny

On Thu, Jan 16, 2020 at 2:34 PM Michael Dorf <mdorf at stanford.edu> wrote:

> Hi Sunny,
>
> You can pass a parameter “download_format=rdf” to download the RDF version
> of an ontology.
>
>
> http://data.bioontology.org/ontologies/ECO/download?apikey=your_api_key&download_format=rdf
>
> Our REST services documentation [1] contains a list of common parameters
> available in the bulk of our endpoints.
>
> When replying, please use the “Reply All” feature of your email client so
> that it’s routed to our support list, which is actively monitored by our
> entire team.
>
> Thanks again for contacting us.
>
> Michael
>
> [1] http://data.bioontology.org/documentation
>
>
> On Jan 16, 2020, at 8:20 AM, Sunny Shang <sunnyshang001 at gmail.com> wrote:
>
> Hello Michael,
> Thank you so much for your quick response and fix.
> I use BioPortal api to search relevant ontologies and to download them
> programmatically. However, I only know how to download it as owl file
> through http://data.bioontology.org/ontologies/mesh/download as an
> example. Can you advise if there is a way to download corresponding rdf
> file?
> Best regards,
> Sunny
>
> On Wed, Jan 15, 2020 at 2:27 PM Michael Dorf <mdorf at stanford.edu> wrote:
>
>> Hi Sunny,
>>
>> Thank you for your email. We’ve had a BioPortal outage this morning,
>> which has now been resolved. Apologies for the interruption. I’ve checked
>> your search query, and it appears to work properly at this point.
>>
>> Please let us know if you experience any further issues.
>>
>> Thanks,
>>
>> Michael
>>
>>
>> On Jan 15, 2020, at 8:07 AM, support at bioontology.org wrote:
>>
>> Name: Ning "Sunny" Shang
>>
>> Email: sunnyshang001 at gmail.com <sunnyshang001 at gmail.com>
>>
>> Location: http%3A%2F%2Fbioportal.bioontology.org
>> <http://2fbioportal.bioontology.org/>%2F500
>>
>>
>> *Feedback:*
>>
>> I am using BioPortal REST API to query bioPortal, but I got Server
>> returned HTTP request 401 error for URL
>> http://data.bioontology.org/search?q=asthma. Please advise if there is
>> any problem with account (e.g. API key).
>> My user name is sunnyshang001.
>> Thank you so much.
>>
>> _______________________________________________
>> bioontology-support mailing list
>> bioontology-support at lists.stanford.edu
>> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>>
>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.stanford.edu/pipermail/bioontology-support/attachments/20200117/2a00ca1b/attachment.html>


More information about the bioontology-support mailing list