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[bioontology-support] [BioPortal] Feedback from Farid

Michael Dorf mdorf at stanford.edu
Mon Jul 27 16:17:03 PDT 2020


Hi Farid,

Thank you for your inquiry. I am not an ontology expert, but you can look at a few ontologies, such as:

Human Disease Ontology (DOID)
https://bioportal.bioontology.org/ontologies/DOID

Foundational Model of Anatomy (FMA)
https://bioportal.bioontology.org/ontologies/FMA

The Clinical Terms Ontology (SNOMEDCT)
https://bioportal.bioontology.org/ontologies/SNOMEDCT

Medical Dictionary for Regulatory Activities Terminology (MedDRA)
https://bioportal.bioontology.org/ontologies/MEDDRA

If you have a specific text that you need to match against the most relevant ontologies, you can use our Ontology Recommender service:

https://bioportal.bioontology.org/recommender

Based on your text, the Recommender finds ontologies that are best suited for the terms found in that text.

You can also use the Category filter on the Ontologies page to narrow the list down to ontologies you deem the most relevant:

https://bioportal.bioontology.org/ontologies

You can access any of these ontologies or tools using our REST API services. The usage instructions can be found here: http://data.bioontology.org/documentation

Thanks,

Michael


----------------------------------------------------
Michael Dorf
Chief Software Architect
The National Center for Biomedical Ontology
Stanford Biomedical Informatics Research
mdorf at stanford.edu<mailto:mdorf at stanford.edu>
O: 650-723-0357
M: 650-995-4374
----------------------------------------------------

On Jul 26, 2020, at 10:47 PM, support at bioontology.org<mailto:support at bioontology.org> wrote:


Name: Farid

Email: ismayilzadeh.farid at gmail.com<mailto:ismayilzadeh.farid at gmail.com>

Location: https%3A%2F%2Fbioportal.bioontology.org<http://2Fbioportal.bioontology.org>%2Fannotator

Feedback:

Hi. I am looking for a dataset that include list of all diseases, categories, body types, causes and symptoms. Can i get these data from you ?

Best regards
Farid Ismayilzada

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