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[bioontology-support] RXNORM Properties

David Saylor david.saylor at beyondlucid.com
Fri Jun 26 10:38:33 PDT 2020


Yes, I think that's just what we need!  I don't see the display parameter
in the documentation.  Is that intentional?

We'll continue on our side.

Thank you!

Best regards,
David

David Saylor, Chief Engineer
*Beyond Lucid Technologies, Inc. *
(650) 648-ePCR office
(818) 660-5726 direct


On Wed, Jun 24, 2020 at 6:52 PM Michael Dorf <mdorf at stanford.edu> wrote:

> Hi David,
>
> Thanks for contacting us. All of the attributes of a calls are stored in
> the “properties” collection. You should be able to get those by using the
> “display” query parameter:
>
>
> https://data.bioontology.org/search?q=Acetaminophen&ontologies=RXNORM&page=1&pagesize=2&roots_only=true&display=prefLabel,synonym,definition,notation,cui,semanticType,properties
>
> Let me know if this works.
>
> Thanks!
>
> Michael
>
> On Jun 24, 2020, at 8:52 AM, David Saylor <david.saylor at beyondlucid.com>
> wrote:
>
> Hello, we are trying to use the BioPortal API to look up RXNORM codes.
> We are able to do the search via a query like below.  What we really want
> to know is the more detailed properties of a particular
>
> Here is the page for Acetaminophen (link
> <https://bioportal.bioontology.org/ontologies/RXNORM/?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161&jump_to_nav=true#details>).
> We would really like to get the additional RXNORM properties from a page
> like, such as Has ingredient or Has ingredients.
>
> Could you let me know the best way to pull out those properties?
>
> Thanks and best regards,
> David
>
> *Query*
>
> https://data.bioontology.org/search?q=Acetaminophen&ontologies=RXNORM&page=1&pagesize=2&roots_only=True
>
>
>
> *First Result*
> {
>   "page": 1,
>   "pageCount": 883,
>   "totalCount": 1766,
>   "prevPage": null,
>   "nextPage": 2,
>   "links": {
>     "nextPage": "
> http://data.bioontology.org/search?q=Acetaminophen&ontologies=RXNORM&page=2&pagesize=2&roots_only=True
> ",
>     "prevPage": null
>   },
>   "collection": [
>     {
>       "prefLabel": "Acetaminophen",
>       "cui": [
>         "C0000970"
>       ],
>       "semanticType": [
>         "T109",
>         "T121"
>       ],
>       "obsolete": false,
>       "matchType": "prefLabel",
>       "ontologyType": "ONTOLOGY",
>       "provisional": false,
>       "@id": "http://purl.bioontology.org/ontology/RXNORM/161",
>       "@type": "http://www.w3.org/2002/07/owl#Class",
>       "links": {
>         "self": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161
> ",
>         "ontology": "http://data.bioontology.org/ontologies/RXNORM",
>         "children": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/children
> ",
>         "parents": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/parents
> ",
>         "descendants": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/descendants
> ",
>         "ancestors": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/ancestors
> ",
>         "instances": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/instances
> ",
>         "tree": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/tree
> ",
>         "notes": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/notes
> ",
>         "mappings": "
> http://data.bioontology.org/ontologies/RXNORM/classes/http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161/mappings
> ",
>         "ui": "
> http://bioportal.bioontology.org/ontologies/RXNORM?p=classes&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FRXNORM%2F161
> ",
>         "@context": {
>           "self": "http://www.w3.org/2002/07/owl#Class",
>           "ontology": "http://data.bioontology.org/metadata/Ontology",
>           "children": "http://www.w3.org/2002/07/owl#Class",
>           "parents": "http://www.w3.org/2002/07/owl#Class",
>           "descendants": "http://www.w3.org/2002/07/owl#Class",
>           "ancestors": "http://www.w3.org/2002/07/owl#Class",
>           "instances": "http://data.bioontology.org/metadata/Instance",
>           "tree": "http://www.w3.org/2002/07/owl#Class",
>           "notes": "http://data.bioontology.org/metadata/Note",
>           "mappings": "http://data.bioontology.org/metadata/Mapping",
>           "ui": "http://www.w3.org/2002/07/owl#Class"
>         }
>       },
>       "@context": {
>         "@vocab": "http://data.bioontology.org/metadata/",
>         "prefLabel": "http://data.bioontology.org/metadata/skosprefLabel",
>         "obsolete": "http://data.bioontology.org/metadata/owlobsolete",
>         "semanticType": "
> http://data.bioontology.org/metadata/umlssemanticType",
>         "cui": "http://data.bioontology.org/metadata/umlscui"
>       }
>     }
>   ]
> }
>
>
> David Saylor, Chief Engineer
> *Beyond Lucid Technologies, Inc. *
> (650) 648-ePCR office
> (818) 660-5726 direct
> _______________________________________________
> bioontology-support mailing list
> bioontology-support at lists.stanford.edu
> https://mailman.stanford.edu/mailman/listinfo/bioontology-support
>
>
>
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