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[bioontology-support] [BioPortal] Feedback from Richard Scheuermann

Scheuermann, Richard RScheuermann at jcvi.org
Thu Oct 1 15:12:21 PDT 2020


How do we change that?

--------------------------------------------
Richard H. Scheuermann, Ph.D.
Director, La Jolla Campus
J. Craig Venter Institute
4120 Capricorn Ln.
La Jolla, CA 92037
www.jcvi.org<http://www.jcvi.org>

rscheuermann at jcvi.org<mailto:rscheuermann at jcvi.org>
858-200-1876




From: Michael Dorf <mdorf at stanford.edu>
Date: Thursday, October 1, 2020 at 3:05 PM
To: "support at bioontology.org" <support at bioontology.org>
Cc: "Richard H. Scheuermann" <RScheuermann at jcvi.org>
Subject: Re: [bioontology-support] [BioPortal] Feedback from Richard Scheuermann

Hi Richard,

Thank you for contacting us. The PCL ontology appears to be configured as a “View” of Cell Line ontology (CL) rather than a standalone ontology. A view usually means a “subset” of the main ontology. By design, views do not appear in the main ontology selector, although the terms from views are searchable via the main BioPortal search.

[cid:image001.png at 01D69805.40790620]

Thanks,

Michael





On Sep 30, 2020, at 2:19 PM, support at bioontology.org<mailto:support at bioontology.org> wrote:

Name: Richard Scheuermann
Email: rscheuermann at jcvi.org<mailto:rscheuermann at jcvi.org>
Location: https%3A%2F%2Fbioportal.bioontology.org<https://nam12.safelinks.protection.outlook.com/?url=http%3A%2F%2F2fbioportal.bioontology.org%2F&data=02%7C01%7Crscheuermann%40jcvi.org%7C2dd2c700e7344e1e5a8208d86655f619%7C24d967f13ed84448baa6560ec572acb3%7C0%7C0%7C637371867411518080&sdata=Ml3pFSkJu5iz47Hpb74Tc1oUpug3tcxn6yyAvd8GHo8%3D&reserved=0>%2F

Feedback:
The Provisional Cell Ontology (https://bioportal.bioontology.org/ontologies/PCL<https://nam12.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbioportal.bioontology.org%2Fontologies%2FPCL&data=02%7C01%7Crscheuermann%40jcvi.org%7C2dd2c700e7344e1e5a8208d86655f619%7C24d967f13ed84448baa6560ec572acb3%7C0%7C0%7C637371867411518080&sdata=xde8T37g1JPzkCHKhvYPdFBAF5jX%2Bdkkgaq7vNjpYQ8%3D&reserved=0> ) does not appear to be discoverable from the Find an ontology search function on the BioPortal home page. Why is that?

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