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[bioontology-support] SPARQL endpoint & federation
John Graybeal
jgraybeal at stanford.edu
Fri Oct 16 16:18:31 PDT 2020
Samuel,
This is done through our umls2rdf software. You can find other references to it in our mailing list archives, e.g., http://ncbo-support.2288202.n4.nabble.com/bioontology-support-CPT-Ontology-td4658098.html#a4658099.
John
On Oct 16, 2020, at 2:43 PM, Samuel Rozé <samuel.roze at birdie.care<mailto:samuel.roze at birdie.care>> wrote:
Hi John,
That's fair enough, thank you for your reply. Would you mind guiding me towards how you have done the Snomed -> RDF conversion and whether this is open-source or not?
Thank you very much,
Samuel.
On Fri, 16 Oct 2020 at 19:57, John Graybeal <jgraybeal at stanford.edu<mailto:jgraybeal at stanford.edu>> wrote:
Samuel,
Our apologies, the current SPARQL endpoint is a beta service, and it appears the mappings endpoint is down. We will try to bring it back up when we can, but I can't guarantee when that will be.
John
On Oct 14, 2020, at 2:44 PM, Samuel Rozé <samuel.roze at birdie.care<mailto:samuel.roze at birdie.care>> wrote:
Hi there,
First, thank you for exposing many APIs around health-care concepts & tools, this is a great contribution to the ecosystem. I have been trying to use your SPARQL endpoint<https://www.bioontology.org/wiki/SPARQL_BioPortal> in some prototype but I keep getting 403s from the endpoint:
{"requestId":"e4ba9488-62bd-8696-ecb6-422668b079e1","code":"BadRequestException","detailedMessage":"The SERVICE call returned an unexpected HTTP result: 403, endpoint: http://sparql.bioontology.org/mappings/sparql/?apikey=0fc6a637-14ef-4d31-8691-ec13dc026d05"}
This `apikey` is the one that I can find in my `sroze` account<https://bioportal.bioontology.org/accounts/sroze> unfortunately. Would you be able to guide me towards a reason? Are they different kind of API keys for this SPARQL endpoint?
Thank you very much,
Samuel.
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Samuel Rozé
VP of Engineering
+447789932317
40 Islington High St<https://maps.google.com/?q=40+Islington+High+St+N1+8XB+London&entry=gmail&source=g>
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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632 | ORCID 0000-0001-6875-5360
--
[https://drive.google.com/a/kametventures.com/uc?id=0ByatJtfiS-ANZ3hwQkRacm1sUlk&export=download]<http://birdie.care/>
Samuel Rozé
VP of Engineering
+447789932317
40 Islington High St<https://maps.google.com/?q=40+Islington+High+St+N1+8XB+London&entry=gmail&source=g>
N1 8XB London<https://maps.google.com/?q=40+Islington+High+St+N1+8XB+London&entry=gmail&source=g>
Birdie.care<http://birdie.care/> - Birdie, your digital care companion
========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632 | ORCID 0000-0001-6875-5360
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