[bioontology-support] SPARQL endpoint & federation

[John Graybeal]

Samuel,

This is done through our umls2rdf software. You can find other references to it in our mailing list archives, e.g., http://ncbo-support.2288202.n4.nabble.com/bioontology-support-CPT-Ontology-td4658098.html#a4658099.

John

On Oct 16, 2020, at 2:43 PM, Samuel Rozé <samuel.roze at birdie.care<mailto:samuel.roze at birdie.care>> wrote:

Hi John,

That's fair enough, thank you for your reply. Would you mind guiding me towards how you have done the Snomed -> RDF conversion and whether this is open-source or not?

Thank you very much,
Samuel.

On Fri, 16 Oct 2020 at 19:57, John Graybeal <jgraybeal at stanford.edu<mailto:jgraybeal at stanford.edu>> wrote:
Samuel,

Our apologies, the current SPARQL endpoint is a beta service, and it appears the mappings endpoint is down. We will try to bring it back up when we can, but I can't guarantee when that will be.

John

On Oct 14, 2020, at 2:44 PM, Samuel Rozé <samuel.roze at birdie.care<mailto:samuel.roze at birdie.care>> wrote:

Hi there,

First, thank you for exposing many APIs around health-care concepts & tools, this is a great contribution to the ecosystem. I have been trying to use your SPARQL endpoint<https://www.bioontology.org/wiki/SPARQL_BioPortal> in some prototype but I keep getting 403s from the endpoint:

{"requestId":"e4ba9488-62bd-8696-ecb6-422668b079e1","code":"BadRequestException","detailedMessage":"The SERVICE call returned an unexpected HTTP result: 403, endpoint: http://sparql.bioontology.org/mappings/sparql/?apikey=0fc6a637-14ef-4d31-8691-ec13dc026d05"}

This `apikey` is the one that I can find in my `sroze` account<https://bioportal.bioontology.org/accounts/sroze> unfortunately. Would you be able to guide me towards a reason? Are they different kind of API keys for this SPARQL endpoint?

Thank you very much,
Samuel.

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Samuel Rozé

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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632  | ORCID  0000-0001-6875-5360





--
[https://drive.google.com/a/kametventures.com/uc?id=0ByatJtfiS-ANZ3hwQkRacm1sUlk&export=download]<http://birdie.care/>

Samuel Rozé

VP of Engineering
+447789932317
40 Islington High St<https://maps.google.com/?q=40+Islington+High+St+N1+8XB+London&entry=gmail&source=g>
N1 8XB London<https://maps.google.com/?q=40+Islington+High+St+N1+8XB+London&entry=gmail&source=g>

Birdie.care<http://birdie.care/> - Birdie, your digital care companion

========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632  | ORCID  0000-0001-6875-5360



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