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[bioontology-support] [External] Re: [BioPortal] Feedback from singaravelua

Singaravelu, Anbumalar SINGARAVELUA at chop.edu
Wed Sep 30 18:03:33 PDT 2020


Thank you John for getting back to me promptly. It is working now.


From: John Graybeal <jgraybeal at stanford.edu>
Date: Wednesday, September 30, 2020 at 4:46 PM
To: "support at bioontology.org" <support at bioontology.org>
Cc: "Singaravelu, Anbumalar" <SINGARAVELUA at chop.edu>
Subject: [External] Re: [bioontology-support] [BioPortal] Feedback from singaravelua

Malar,

Our apologies, we until recently were still re-indexing all the updated ontologies after the UMLS upgrade. Once that process completes, the index for HP will be replaced and your should again be able to search the HP ontology. You may have caught us mid-swap; I'm told that swap has taken place, and the command is indeed working now.

John


On Sep 30, 2020, at 11:55 AM, support at bioontology.org<mailto:support at bioontology.org> wrote:

Name: singaravelua
Email: singaravelua at email.chop.edu<mailto:singaravelua at email.chop.edu>
Location: http%3A%2F%2Fbioportal.bioontology.org<https://nam01.safelinks.protection.outlook.com/?url=http%3A%2F%2F2fbioportal.bioontology.org%2F&data=02%7C01%7CSINGARAVELUA%40chop.edu%7C28182afce8104e3190d608d86581d632%7Ca611241607b041a59bb1d146b575c975%7C1%7C0%7C637370955628124275&sdata=57qaj8gkYVss3YJoAFl8fRBo84DzPH0qJF2pJZ1pi4w%3D&reserved=0>%2Fontologies%2FHP%3Fp%3Dclasses%26conceptid%3Droot

Feedback:
Hi,
We have an application that uses the data.bioontology search api for ontology HP.
Example:
http://data.bioontology.org/search?q=asthma&ontologies=HP&apikey=ab469d82-63f0-44c7-8777-cebf862de610<https://nam01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fdata.bioontology.org%2Fsearch%3Fq%3Dasthma%26ontologies%3DHP%26apikey%3Dab469d82-63f0-44c7-8777-cebf862de610&data=02%7C01%7CSINGARAVELUA%40chop.edu%7C28182afce8104e3190d608d86581d632%7Ca611241607b041a59bb1d146b575c975%7C1%7C0%7C637370955628134274&sdata=0WT4WY%2F06iWTlB9XRUmNWavCLY5u%2F2kze4fbX0Ubc2w%3D&reserved=0>
This is not working starting late yesterday (9/29/2020) afternoon. Is it due to your UMLS 2020AA upgrade? If so, when will be the service back?
Thanks,
Malar Singaravelu
The Children's Hospital of Philadelphia

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========================
John Graybeal
Technical Program Manager
Center for Expanded Data Annotation and Retrieval /+/ NCBO BioPortal
Stanford Center for Biomedical Informatics Research
650-736-1632  | ORCID  0000-0001-6875-5360





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